Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12j01
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...   143   1e-34
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   5.3  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   5.3  
AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical...    28   7.0  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score =  143 bits (346), Expect = 1e-34
 Identities = 63/93 (67%), Positives = 78/93 (83%)
 Frame = +1

Query: 394 VIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 573
           V++EPHR  GVFI +GKEDAL TKN+V G  VYGEKR+SV++    +EYRVWNPFRSKLA
Sbjct: 117 VVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSVDDGAGSIEYRVWNPFRSKLA 176

Query: 574 AAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVS 672
           A+IMGG++  H+ PG+++LYLGAASGTTVSH S
Sbjct: 177 ASIMGGLENTHIKPGTKLLYLGAASGTTVSHCS 209


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 573  SCNYGWSGCYTHGPWVKSF----VSRSCQWNNSQSC 668
            SC  GW G   + P +K +     S+SC+  NS+SC
Sbjct: 1230 SCQPGWRGKKCNRPCLKGYFGRHCSQSCRCANSKSC 1265


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 573  SCNYGWSGCYTHGPWVKSF----VSRSCQWNNSQSC 668
            SC  GW G   + P +K +     S+SC+  NS+SC
Sbjct: 1230 SCQPGWRGKKCNRPCLKGYFGRHCSQSCRCANSKSC 1265


>AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical
           protein Y87G2A.11 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 466 NLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLAAAIMGG 591
           N+  G E+    +I +ENE D++    W+P        + GG
Sbjct: 145 NMENGPEIVQNLKIPLENEEDEMFSATWSPHHDGNMLGVTGG 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,179
Number of Sequences: 27780
Number of extensions: 176202
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)