Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12i24
(707 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 36 4e-04
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 23 2.1
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 2.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 5.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 5.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 5.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 5.0
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 22 6.6
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 22 6.6
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 8.7
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 8.7
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 35.9 bits (79), Expect = 4e-04
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 197 IITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRP--CDLA 370
++TGANSGIGK + +G KV V K + +V E +K P CDL+
Sbjct: 11 LVTGANSGIGKCLIECLVGKGMKVIGIAPQVDK----MKTLVEELKSKPGKLVPLQCDLS 66
Query: 371 STASIREFVARFKGEEPHLHVLVNNAGV 454
+ I + + + + +L+NNA +
Sbjct: 67 NQNDILKVIEWVEKNLGAIDILINNATI 94
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 612 PRWCALLDTTTTRLGDEALSVSRSKFVSKKCPR*LTPSW 496
PR+C D+ T EA S + +S+ L+PS+
Sbjct: 536 PRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPSY 574
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 602 HQRGRIHKHDLNMSENYDASAAYSQS 679
++ R H+ D ++E+YDAS++ S S
Sbjct: 28 YKHSRRHR-DFTVAESYDASSSNSDS 52
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 309 GATSCLRRTTNTCTAD 356
G C TTN CTA+
Sbjct: 431 GPNPCTHTTTNGCTAE 446
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 309 GATSCLRRTTNTCTAD 356
G C TTN CTA+
Sbjct: 417 GPNPCTHTTTNGCTAE 432
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 309 GATSCLRRTTNTCTAD 356
G C TTN CTA+
Sbjct: 451 GPNPCTHTTTNGCTAE 466
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 309 GATSCLRRTTNTCTAD 356
G C TTN CTA+
Sbjct: 400 GPNPCTHTTTNGCTAE 415
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 456 WNHPRESLRTASR 494
W+ PRES +T S+
Sbjct: 47 WSRPRESAQTTSK 59
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 370 GQVAGSAVHVFVVRLKHDV 314
G AGS +H+ ++ L H+V
Sbjct: 107 GTSAGSLLHICMLELGHEV 125
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.4 bits (43), Expect = 8.7
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Frame = +3
Query: 171 PSAPTTEQLSLLVLTAVSGKLQQKTSPKGVLRCL--WRAVTSRSARSNGATSCLRRTT-N 341
P+ T SLL L+ K Q P L+ + + +V + CL
Sbjct: 274 PARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMALMEYCLVNIVLG 333
Query: 342 TCTADPATWPARPPSESSLPDSKERSHTF 428
P P PP SS PDS + F
Sbjct: 334 DSDTPPKPAPPPPPPSSSGPDSAKLDKIF 362
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 20 QQLATLAVSDSAKQKMWVPST 82
Q+ L +S +K+WVP T
Sbjct: 101 QEEEVLTLSGDFAEKIWVPDT 121
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,116
Number of Sequences: 438
Number of extensions: 4179
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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