Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12i21
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    33   0.042
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    29   0.39 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    29   0.51 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   4.8  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    26   4.8  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.3  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   6.3  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   8.3  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +2

Query: 206 LHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTG 316
           LHSH   Y  GS QQ VT     D NN  W+  P  G
Sbjct: 353 LHSHVQTYPEGSEQQQVTGYHHKDGNN-EWMFVPTHG 388



 Score = 32.3 bits (70), Expect = 0.055
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 476 PIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQ-EVSCYG 589
           PI   + +RL H  T +NLH+H   +PL+    EVS YG
Sbjct: 401 PILNGSVVRLIHPFTNRNLHTHKIPAPLNKRMYEVSGYG 439



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +2

Query: 164 GSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSD--DNNSHWLVRPMTGETCKRGY 337
           GS+++LI+      LH+H +          V+   + D  D   +W+V  +     +  Y
Sbjct: 405 GSVVRLIHPFTNRNLHTHKIPAPLNKRMYEVSGYGLGDVGDEKDYWIVNILYDTAHRDAY 464

Query: 338 EI 343
            +
Sbjct: 465 NV 466


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = +2

Query: 119 LSEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGS-------GSGQQSVTAVEVSD 277
           LS+    A +  +    I+ + +      LHSH  KY          SG Q VT  +  D
Sbjct: 327 LSDNPITANSTILNYYDIVTIKHMGTNAFLHSHPEKYPIPYDDGRISSGGQQVTGYQFDD 386

Query: 278 DNNSHWLVRP 307
           +NN +W++ P
Sbjct: 387 ENN-YWMILP 395



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 470 SAPIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQE 574
           + P+K    I+L HV T  +L +H   SP     E
Sbjct: 408 NVPVKNMDYIKLHHVGTNTDLMTHDVASPYHPTNE 442


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 479 IKCNTNIRLQHVATKKNLHSHFFTSPLSGNQ---EVSCYG 589
           +K  + +RL+HV T + LHSH     +S N    E S YG
Sbjct: 377 LKDGSVVRLRHVMTGRALHSHEHKPIVSNNDWQLEASAYG 416


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 149 EFVTCGSILKLINTDLKLRLHSHDV 223
           E+  CG ++  +NT L++RL   ++
Sbjct: 117 EYCPCGGLIDFLNTRLQVRLSEQEI 141


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 341 ILNNAHKQLNLTL*KSKDIYGTECSVHHHYSSVKLQDT*KMFFSAPIK 484
           IL NA  + NL + K K++YG E ++ +  +  +  D  ++    P+K
Sbjct: 486 ILENAGLEGNLIVGKLKELYGKEFNIGYDIAKDRFVDLNEIGVLDPLK 533


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 231 PYFTSCE*SLNFKSVLMSFNIDPHVTNSFFAASVFSLKIEMRNTTVTKVAIE 76
           P F+S    +  K VL S + DP+  N+  A S      +   T  +K A+E
Sbjct: 20  PVFSSQYSDIENKDVLKSNSWDPYAANAPIALSEIPSSSKSGKTNGSKAAVE 71


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 272 SDDNNSHWLVRPMTGET 322
           SDD+N+H+ V   TGET
Sbjct: 495 SDDDNTHFYVNLYTGET 511


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 470 SAPIKCNTNIRLQHVATKKNLHSHFFTS-PLSGNQEVSCY 586
           +AP+  NT++ +    T     S FFTS P + ++  S Y
Sbjct: 122 TAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSY 161


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 251 SVTAVEVSDDNNSHWLVRPMTGETCKRGYEILNNAHKQL 367
           S +++    +  SH L++  T   C +  EIL++AH QL
Sbjct: 380 SNSSIASIQEEASHPLIKLQTHIICNKISEILSSAHIQL 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,777
Number of Sequences: 5004
Number of extensions: 48093
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)