Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12i21
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047...    84   9e-17
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274...    76   2e-14
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911...    29   3.7  
06_03_1480 - 30432718-30432996,30433151-30434123,30434251-304345...    28   6.5  
06_02_0024 - 10714741-10716241,10716774-10717840                       28   6.5  
06_02_0019 - 10656005-10657511,10657712-10658739                       28   6.5  

>08_01_1061 -
           10804269-10804352,10804464-10804593,10804696-10804745,
           10805154-10805216,10806235-10806375,10806541-10806925,
           10807735-10808339
          Length = 485

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
 Frame = +2

Query: 155 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 334
           +T GS +KL++   K RLHSHDV YGSGSGQQSVT+    DD+NS+W+VRP    + K+G
Sbjct: 331 ITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTSFPNVDDSNSYWIVRPQPDTSAKQG 390

Query: 335 YEILNNAHKQLNLTL*KSKDIYGTECSVHHHYSSVKLQDT*KMFFSAPIKCNTNIRLQHV 514
             I +                 G   S    Y  ++++ + K +     + N  IRL+HV
Sbjct: 391 DPITHGTVVSC---------FGGENESDTGDYWRLEIEGSGKSW-----RQNQKIRLRHV 436

Query: 515 ATKKNLHSH--FFTSPLSGNQEVSCYGD 592
            T   LHSH   +T    G QEV   GD
Sbjct: 437 DTGGYLHSHDRKYTRIAGGQQEVCGVGD 464



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 470 SAPIKCNTNIRLQHVATKKNLHSHFFT-SPLSGNQEVSCY 586
           S PI   + I+L H  TK  LHSH       SG Q V+ +
Sbjct: 328 SVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTSF 367


>08_02_0809 -
           21426670-21426753,21427188-21427317,21427403-21427452,
           21428209-21428349,21428907-21429047,21429144-21429251
          Length = 217

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 36/66 (54%), Positives = 45/66 (68%)
 Frame = +2

Query: 137 AAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTG 316
           AA+   V  GS +KL++   K RLHSHDV YGSGSGQQSVT     DD+NS+W+VRP   
Sbjct: 31  AAEGVEVAYGSTIKLMHEKTKHRLHSHDVPYGSGSGQQSVTGFPEVDDSNSYWIVRPSPD 90

Query: 317 ETCKRG 334
            + K+G
Sbjct: 91  SSAKQG 96



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = +2

Query: 479 IKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYG 589
           I+  + IRLQH+ T+K LHSH   SPLSGN EVSC+G
Sbjct: 99  IETGSIIRLQHMRTRKWLHSHLHASPLSGNLEVSCFG 135


>08_02_0216 +
           14390739-14390847,14390983-14391017,14391112-14391153,
           14391253-14391346,14391476-14391672,14392407-14392424,
           14392938-14393182,14393300-14393657,14393741-14394316,
           14395172-14395447
          Length = 649

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 204 LNFKSVLMSFNIDPHVTNSFFAASVFSLKIEMRNTTVTKV 85
           LNF + ++  N DPH     F  +VF L  E R   +T++
Sbjct: 513 LNFSNPVIVKNFDPHACGWAFGMNVFDL-AEWRRQNITEI 551


>06_03_1480 -
           30432718-30432996,30433151-30434123,30434251-30434585,
           30434929-30435075,30435498-30435569
          Length = 601

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 204 LNFKSVLMSFNIDPHVTNSFFAASVFSLKIEMRNTTVTKV 85
           LNF    +S N DPH     F  ++F LK E +   +T +
Sbjct: 464 LNFSHPKISENFDPHACGWAFGMNMFDLK-EWKKQNITGI 502


>06_02_0024 - 10714741-10716241,10716774-10717840
          Length = 855

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +2

Query: 77  SIATLVTVVFLISILSEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQ 247
           SI+ + +++ +I +L E  +   NE+     +LK +NT + L +    V YG+GS +
Sbjct: 736 SISFMASIIVIILLLPESLKLNVNEW-----LLKAMNTTVVLDMIGLLVAYGTGSSR 787


>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +2

Query: 77  SIATLVTVVFLISILSEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSV 256
           S + + +VV ++ +L E      NE+     +LK +NT + L +    V YG+GS ++  
Sbjct: 719 STSFMASVVVIVLLLPESASPHVNEW-----LLKAMNTTIVLDMIGLLVAYGAGSSREWE 773

Query: 257 TA 262
           T+
Sbjct: 774 TS 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,076
Number of Sequences: 37544
Number of extensions: 280187
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)