Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12i17
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    29   0.66 
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    29   0.66 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    29   0.87 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   2.6  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    27   3.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    26   4.6  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.6  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             26   6.1  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   6.1  
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    26   6.1  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   8.1  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -3

Query: 516  VESTFLITVLAITISFPSTVSTGILFSLSRLNSKS 412
            +  ++L+TV   T++FP  +++  L +LS L+S+S
Sbjct: 927  IYKSYLVTVYFPTVNFPDVMASEYLQALSNLDSRS 961


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
 Frame = -3

Query: 420 SKSHLGSDLTLIV-PISLLMSVNESKAIF-FVSTLPLDLAKSFLSFLSDLSATVLSKYAF 247
           +KS+L   +T I  P  L  S+   +A   F       +  S   + + +++  LS  + 
Sbjct: 50  AKSNLRQPITTIAQPAILACSIALLRAFPPFTKKFRFYVGHSLGEYSAFVASQTLSFSSA 109

Query: 246 SKVVQHLRHILSGSPSLQETFTSAIAVSISA*FPDNLYLNNGHKVLLLVRHI 91
            K+VQ     +S + +L +  TS +A+++++ FP + +LN  +  +   R I
Sbjct: 110 LKLVQARAKAMSYASALCQNPTSMLAITLTSRFPTDNFLNTVYSAVQKYRLI 161


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -3

Query: 396 LTLIVP--ISLLMSVNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLR 223
           + LI P    L +++ ++  + + S L   +    LSF  D     L+ ++ S   QHL 
Sbjct: 167 ICLIKPSIFDLAITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFSLSNYQQHLY 226

Query: 222 HILSGSPSLQ 193
            +L+ + SL+
Sbjct: 227 QVLTQNVSLR 236


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
 Frame = -3

Query: 483 ITISFPSTVSTGILFSLSRLNSKSHLGSDLTLIVP------ISLLMSVNESKAIFFVSTL 322
           + I + S V + +++SL     K  +GS++  ++P       ++L  V E      ++T 
Sbjct: 198 LAIYYVSCVVSQLVYSLGGSFFKGSVGSEMIEVIPFFHQIAFTILNRVGEDNPKSVIAT- 256

Query: 321 PLDLAKSFLSFLSDLSATVLSKYAFSKVVQHL-RHILSGSPSLQETFTSAIAVSISA 154
              LA    S L+ L   +L      ++++   RHIL G      +F    AV +S+
Sbjct: 257 -TILAYCLSSILTGLVFFILGILRLGRLIEFFPRHILLGCIGGVGSFLVLTAVEVSS 312


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 186 KSLVMMDYLKGYALSVARLWKRRTCSRQLLRGLTE 290
           K  V+M Y+      V ++W+R TCS   L  LTE
Sbjct: 197 KGSVVMGYMASLG-HVTQVWERGTCSPSRLSFLTE 230


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 149 NYAEMLTAIADVKVSCNDGLPERICLKCCTT 241
           NYA++L    D+  S + G P  I    CTT
Sbjct: 49  NYADLLKRNEDLNASLSTGSPVEITSTSCTT 79



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
 Frame = -3

Query: 558 ASPSPITST--FGASIVESTFLITVLAITISFP-----STVSTGILFSLSRLNSKSHLGS 400
           +S +P+TST     +   ST ++       S P      T ST + ++ + + S ++  S
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTIS 576

Query: 399 DLTLIVPISLLMS-VNESKAIFFVSTLPLDLAKSFLSFLSDLS---ATVLSKYAFSKVVQ 232
             T +    +  +    S ++ + ST P+    S  S  + +S    T ++  + SKV  
Sbjct: 577 SSTPVTSTPVTTTNCTTSTSVLYTST-PITSPNSTSSSSTQVSWNSTTPITGTSTSKVTS 635

Query: 231 HLRHILSGSPSLQETFTSAIAVSISA 154
                L+ +     TFTS+ ++S S+
Sbjct: 636 STSIPLTSTNRTSTTFTSSTSISTSS 661


>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 129 NNGHKVLLLVRHIRQDCISTMGFE 58
           ++G KVL  VR + QD ++T GF+
Sbjct: 5   SSGTKVLSFVRSVWQDFVNTNGFD 28


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 266 TVAERSDRKLRKLLAKSK-GNVLTKKIAFDSFTDIKSEIGTISVKSE--PKWDLELSLDS 436
           T+AE  +RK+ +LL K K G    +K A    TD   + G  ++ ++  P        D 
Sbjct: 372 TIAELRERKILRLLLKVKNGTPPMRKSALRQLTDQARDFGAAALFNQILPLLMERTLEDQ 431

Query: 437 ENKMPVETVD 466
           E  + V+ +D
Sbjct: 432 ERHLLVKVID 441


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 162 ISA*FPDNLYLN----NGHKVLLLVRHIRQDCISTMGFEFVSIFNELSADNIDNKSE 4
           +SA + DNL ++    N H+   L  H+  D  S   F    I ++ S D+ DN+ +
Sbjct: 211 VSASWVDNLDMDMASFNSHRERFLTEHVNMDERSDDDFLLGLISSDSSVDDHDNEQD 267


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
 Frame = -3

Query: 483 ITISFPSTVSTGILFSLSRLNSKSHLGSDLTL-IVPISLLMSVNESKAIFFVSTL----- 322
           +++ F S+V   +L  L     K+ +  +L L +V ++ ++S+++ +++  ++++     
Sbjct: 348 LSLPFSSSVVEIVLKFL--YTDKTDIAPELALDVVYVADMLSLDKDRSLKSLASIVITKQ 405

Query: 321 --PLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRHIL 214
             P+D     L    D S   L +YA   +  HL H++
Sbjct: 406 EEPIDSIYDILRTAWDTSTPRLEQYASEYMANHLEHLI 443


>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +2

Query: 182 VKVSCNDGLPERICLKCCTTLEKAYLLKTVAERSDRKLRKLLAKSKGNVLTKKIAFDSF 358
           ++V CND L +++ +KC          K VA ++    R+++ K   +V    I    +
Sbjct: 2   IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADY 60


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 380 GTISVKSEPKWDLELSLDSENKMPVETVDGKDIVIANTVIRK 505
           G + VKS  +W+LE  + +ENK       G    + +T +++
Sbjct: 86  GVLDVKSPRQWELE-KISTENKKKYAERHGYHFFVKSTGLKR 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,180
Number of Sequences: 5004
Number of extensions: 45683
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)