Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12i17
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of...    29   2.5  
AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical p...    29   4.3  
AF078790-16|AAC26939.1|  190|Caenorhabditis elegans Hypothetical...    29   4.3  
AF039041-2|AAP46270.1|  587|Caenorhabditis elegans Hypothetical ...    29   4.3  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U28940-4|AAA68350.1|  106|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    28   7.6  

>AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of
           presenilin 5 protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 360 VNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRHILSGS 205
           + E KA F VSTLP+ + K   + ++D  A   +     K V+ +R+I  GS
Sbjct: 467 IEEMKAAFVVSTLPIGVLKK--TIIADERAPTFTPSLPDKKVEAIRNIGCGS 516


>AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical
           protein Y40B1B.6 protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 360 VNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRHILSGS 205
           + E KA F VSTLP+ + K   + ++D  A   +     K V+ +R+I  GS
Sbjct: 467 IEEMKAAFVVSTLPIGVLKK--TIIADERAPTFTPSLPDKKVEAIRNIGCGS 516


>Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical
           protein T19C4.3 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
 Frame = -3

Query: 558 ASPSPITSTFGASIVESTFLITVLAITISFPSTVSTGILFSLSRLNSKSHLGSDLTLIVP 379
           A+  PI  TF   ++    +++V ++ ++  S VS   L +  R   + +  S + +   
Sbjct: 167 ATEMPIPDTF-IYLIPFMVVVSVSSVLVNVTSFVSLRHLKTQKRGKVEKNFISIMAITCA 225

Query: 378 ISLLMSVNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKY---AFSKVV-QHLRHILS 211
           + LL  V     ++F +        SFL F+SD   T++  +    FS  + + ++ +L 
Sbjct: 226 VQLLGCVLSVARVYFSANRIAATLASFLPFVSD-GLTLVQPWLLVVFSSTMRRRIKQVLG 284

Query: 210 GSPSLQETFTSAIAVS 163
                Q TF    +V+
Sbjct: 285 YQQGSQGTFVIVRSVT 300


>U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical
           protein C18A3.2 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 378 ISLLMSVNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRH 220
           + +L+ ++ S    F+ T  ++ +K+ +SFL   S  V     F  +V H+RH
Sbjct: 14  VFILLLISTSIPYTFLRTCCVNASKTSISFLGCASCGVFIATCFLGLVPHVRH 66


>AF078790-16|AAC26939.1|  190|Caenorhabditis elegans Hypothetical
           protein F36H12.17 protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 291 FLSDLSATVLSKYAFS-KVVQHLRHILSGSPSLQETFTSAIAVSISA*FPDNLYLN 127
           F +D S+   S Y  S +    L   LSGSP  Q    +  + SI    PD++++N
Sbjct: 43  FGNDTSSYASSSYVLSVQTSSPLNIYLSGSPECQRILLAENSGSIEMEIPDDIWIN 98


>AF039041-2|AAP46270.1|  587|Caenorhabditis elegans Hypothetical
           protein W03F8.10 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/98 (24%), Positives = 47/98 (47%)
 Frame = +2

Query: 272 AERSDRKLRKLLAKSKGNVLTKKIAFDSFTDIKSEIGTISVKSEPKWDLELSLDSENKMP 451
           A +    L+K + + +  +     A+++ T +  EI T+ V++      EL   + N   
Sbjct: 385 ANKEAELLQKAMEEIREALQLADQAYNNVTSVLEEIDTMQVQAR-----ELIDKARNS-- 437

Query: 452 VETVDGKDIVIANTVIRKVDSTMDAPKVEVIGEGDAAQ 565
            E V+GK    ANT + +++  M   KVE +   ++A+
Sbjct: 438 TEAVEGK-AQAANTTLAELEGVMSGVKVEYLQISESAK 474


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical protein
            B0244.6 protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
 Frame = -3

Query: 549  SPITSTFGASIVESTFLITVLAITISF-------PSTVSTGILFSLSRLN-SKSHLGSDL 394
            SPI       IV   FLIT++ ++  F             G   S   L+ ++  LG  L
Sbjct: 805  SPIVGLINFIIVSFAFLITIIILSFVFICLSFHIRKAKKLGSYTSSQTLHHARGRLGWTL 864

Query: 393  TLIVPISLLMSVNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLS 259
            T I+ ISL   + ES  I   +   L+   +F      + AT+ +
Sbjct: 865  TAIIVISLAEGIPESLLIGLKADNALNTCNNFYQADRLVDATIFT 909


>U28940-4|AAA68350.1|  106|Caenorhabditis elegans Hypothetical
           protein T24H7.4 protein.
          Length = 106

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/76 (19%), Positives = 33/76 (43%)
 Frame = +2

Query: 140 LSGNYAEMLTAIADVKVSCNDGLPERICLKCCTTLEKAYLLKTVAERSDRKLRKLLAKSK 319
           +S N  +++   A +  + + G    +  KC   LE+   ++ + E     L + L  ++
Sbjct: 7   ISSNVHKLVGVTAGMNTAASTGPMNLVLDKCSVVLEELRTIQILTETHSEGLSEQLKMTE 66

Query: 320 GNVLTKKIAFDSFTDI 367
            N+L  +  FD    +
Sbjct: 67  KNILEMENLFDQIDQL 82


>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 23/62 (37%)
 Frame = +2

Query: 86  CRICLTNSKTLCPLFRYKLSGNYAEMLTAIADVKVSCNDGLPERICLKCCTTLEKAYLLK 265
           C+ C    K LC             M T + D K  C DG+ E  C   CT    +  LK
Sbjct: 289 CQRCSGTDKALC-------DDGTCIMRTQVCDGKKDCTDGMDEEDCPGSCTIESFSPKLK 341

Query: 266 TV 271
            V
Sbjct: 342 MV 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,699
Number of Sequences: 27780
Number of extensions: 251481
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)