Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12i17
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    28   0.10 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 18/86 (20%), Positives = 41/86 (47%)
 Frame = -3

Query: 549 SPITSTFGASIVESTFLITVLAITISFPSTVSTGILFSLSRLNSKSHLGSDLTLIVPISL 370
           S +T +   S +   FLIT+L   +S    ++     SL  L+ K +     ++++  S 
Sbjct: 342 SSVTESVLKSKIGQVFLITILDSKVSARIEMNEDDNTSLVSLDKKQYTWRHTSVLIGWSA 401

Query: 369 LMSVNESKAIFFVSTLPLDLAKSFLS 292
            + ++    I  +  +P ++ ++F+S
Sbjct: 402 FLCISLVYIIMLIIFIPRNIYENFIS 427


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 498 ITVLAITISFPSTVSTGILFS 436
           IT +++TIS  ++V+   LFS
Sbjct: 879 ITSMSVTISLSASVTIACLFS 899


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +2

Query: 518 MDAPKVEVIGEGDAAQITW 574
           +D   +E+I  GD   + W
Sbjct: 316 IDRTPIEIINSGDVQDVPW 334


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +2

Query: 518 MDAPKVEVIGEGDAAQITW 574
           +D   +E+I  GD   + W
Sbjct: 316 IDRTPIEIINSGDVQDVPW 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,146
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)