Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12i16
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.56 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 300 DPNESKVAMRKVAVPAHRYTPLKESWLKIF-TPIVEHLLLQVRFNTKTRNVEIKVGPETK 476
           DP E  V     A     YTPLKE     +  P +E L     F+T+     + VG E++
Sbjct: 179 DPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEEL----GFDTEGLLPPVWVGGESE 234

Query: 477 DIANLQKAADFVKAFIYGF 533
            +A L++  +  KA++  F
Sbjct: 235 ALARLERHLE-RKAWVASF 252


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 501 QLSVNLQYLLFLVRLLSQHSSFSC*TLLVAISV 403
           ++ +  QYLL L+R L Q S+    TLL   SV
Sbjct: 135 KVDMTRQYLLQLIRNLRQSSALDGVTLLADNSV 167


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 549 RHHQLQNH 526
           RHH LQNH
Sbjct: 140 RHHHLQNH 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,043
Number of Sequences: 438
Number of extensions: 3272
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)