Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12i09
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    30   0.85 
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    29   2.0  
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967...    27   7.9  

>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +1

Query: 244 YSRHRIIIKKRFGLLLTQQPEPIH*NKY*FALKITKMV*ILIHFNNYFQNLRHTGFI*HT 423
           Y  ++ I  KR    +T +P P H      A+ +T  V +    + +F+    + ++ HT
Sbjct: 151 YYEYKYISGKRLEYFMTSKPLPQHFTVLVRAIPVTNGVSVSDAVDKFFKEYHSSTYLSHT 210

Query: 424 TEHKCSYKRNIL 459
             H+    R +L
Sbjct: 211 VVHQTGKLRRLL 222


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -3

Query: 426 CCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKSLLDYY 259
           CC      +  +L+++  +Y  L  +   QCK        F  +C   A  LLD +
Sbjct: 87  CCDFCGEPLRFVLQVVFHLYDKLQVYAPIQCKETAYHRTLFVFMCPSMACLLLDQH 142


>03_03_0028 +
           13893813-13893959,13894961-13895264,13896557-13896761,
           13897428-13897646,13897734-13897869,13899130-13899387,
           13899402-13899686
          Length = 517

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 235 EDKYSRHRIIIKKRFGLL 288
           E+KYSR RI++ K FGL+
Sbjct: 250 EEKYSRARIMLAKVFGLI 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,714,387
Number of Sequences: 37544
Number of extensions: 194007
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)