Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12i05
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 193 3e-50
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.17
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 29 0.92
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 3.7
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 4.9
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 6.5
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 25 8.6
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 8.6
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 8.6
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 193 bits (470), Expect = 3e-50
Identities = 85/144 (59%), Positives = 109/144 (75%), Gaps = 1/144 (0%)
Frame = +1
Query: 88 MPKVRRSR-KPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRY 264
MP++R SR K PP+G++ IEPTL E + +MR+ E +G K E L PIF++HHQ+SRY
Sbjct: 1 MPRLRTSRTKRPPDGFDEIEPTLIEFQDRMRQIENTMGKGT-KTEMLAPIFQLHHQRSRY 59
Query: 265 IYDLFYRRKAISRELYQYCLNEKIADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCIC 444
IYDL+Y+R+AIS ELY + L + AD NLIAKWKK GYE LCCLRCIQT ++ F + CIC
Sbjct: 60 IYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPGYEKLCCLRCIQTAESKFGSTCIC 119
Query: 445 RVPKSKLEEGRIVECVHCGCRGCS 516
RVPKSKL++ + V C HCGC GC+
Sbjct: 120 RVPKSKLDKDQRVRCTHCGCNGCA 143
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.1 bits (67), Expect = 0.17
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +1
Query: 76 RYYKMPKVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPI 234
R + V RSR PPP + +ELEQ +R+ T ++ KRK+ SLW I
Sbjct: 88 RSLRYSSVGRSRSPPPSRERSVRSIEQELEQ-LRDV-TPINQWKRKR-SLWDI 137
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.92
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 334 IADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCICRVPKSKLEEGRIVECVHCGCRG 510
+AD +L+A ++C L C T T+ +K+E G V V CGC G
Sbjct: 154 VADISLVAISHSAPLRSICLLGCGVTTGFGAVTH------SAKVESGSTVAVVGCGCVG 206
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 289 KAISRELYQYCLNEKIADANLIAKWKKTGYENL 387
K I R+ Y CLN+KIA ++ + K YE++
Sbjct: 106 KWIYRKDYNLCLNQKIAFVLVMLHFMKREYESI 138
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 182 PKLNRTKGNENKNPYGQFSKYIIRNRVTSMTYFTDVRPLVENFTNIA 322
P+L TK N NP+ QFS ++ + VR + F+NIA
Sbjct: 555 PRLEPTKTGSN-NPFAQFSNLPSQSTAPATKPMKPVRTGDDRFSNIA 600
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 443 VEFRRVSWKREGLLNVSIVVAEVVQDRN**SISRTSVVI 559
V F V+W ++GLLN SI V + ++ + S+S +V+I
Sbjct: 555 VNFATVNWIKDGLLNSSISVLKSMRIPS--SVSYEAVII 591
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 148 TLEELEQKMREAETEPHEGKRKQE--SLWPIFKIHHQKSRYIYDLFYRRKAISREL 309
T++ +E+K+ EP + K+KQ+ + +FK H + S + + A+S++L
Sbjct: 97 TIDGIEEKVHTNTFEPRKPKQKQDYTNSPTLFKRHDELSLKSLNSLHPSSALSKKL 152
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 124 EGWELIEPTLEELEQKMREAETEPHEGKRK 213
EGW+LIE E E + ++ E+ GKR+
Sbjct: 915 EGWKLIEQPNVESEIEDQDEESSDLNGKRR 944
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 406 VCSEDNTNFHTQSFSISL*DWRQ 338
V SE+ N +TQ+F +S WRQ
Sbjct: 8 VRSEEAANSYTQTFGMSWRQWRQ 30
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 142 EPTLEELEQKMREAETEPHEGKRKQE 219
+ T+EEL+ K +E + E +GKR+++
Sbjct: 206 DATVEELQNKGKEKQKELKKGKREKK 231
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 95 RFVAVGNHHQKDGN*LSQHLRNLNRKCEKPKL--NRTKGNENKNPYGQFSKYIIRNRVTS 268
RF + G+ + + N +S L + L NR G+ N+ Y Q S+Y + + +S
Sbjct: 109 RFFSEGSFNLPNSN-MSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSS 167
Query: 269 MTY 277
+Y
Sbjct: 168 PSY 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,904
Number of Sequences: 5004
Number of extensions: 60489
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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