Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12i05
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0032 + 21731148-21731241,21731381-21731568,21732806-21732961 244 6e-65
01_06_1404 - 37062931-37063086,37064029-37064216,37064296-37064389 237 9e-63
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 234 5e-62
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 209 2e-54
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 32 0.42
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 30 1.7
09_06_0307 - 22190310-22190468,22190516-22190569,22190677-221910... 30 1.7
02_05_0459 + 29217728-29217919,29218095-29218190,29219785-292198... 30 1.7
11_04_0171 + 14471717-14472124 29 5.1
10_03_0005 + 6920750-6920848,6921283-6921390,6921516-6921564,692... 29 5.1
>05_05_0032 + 21731148-21731241,21731381-21731568,21732806-21732961
Length = 145
Score = 244 bits (597), Expect = 6e-65
Identities = 104/143 (72%), Positives = 122/143 (85%)
Frame = +1
Query: 88 MPKVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRYI 267
MPK++ SR PEGWELIEPTL +LE KMREAE +PH+GKRK E+LWPIF+I HQKSRYI
Sbjct: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
Query: 268 YDLFYRRKAISRELYQYCLNEKIADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCICR 447
YDL+YRRK IS+ELY++CL++ AD NLIAKWKK GYE LCCLRCIQTRD NFAT C+CR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 448 VPKSKLEEGRIVECVHCGCRGCS 516
VPK L E +++ECVHCGCRGC+
Sbjct: 121 VPK-HLREEKVIECVHCGCRGCA 142
>01_06_1404 - 37062931-37063086,37064029-37064216,37064296-37064389
Length = 145
Score = 237 bits (579), Expect = 9e-63
Identities = 100/143 (69%), Positives = 120/143 (83%)
Frame = +1
Query: 88 MPKVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRYI 267
MPK++ SR P GWELIEPT+ EL+ KMREAE + H+GKRK E+LWPIF+I HQ+SRYI
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 268 YDLFYRRKAISRELYQYCLNEKIADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCICR 447
YDL+YRRK IS+ELY++CL++ AD NLIAKWKK GYE LCCLRCIQTRD NFAT C+CR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 448 VPKSKLEEGRIVECVHCGCRGCS 516
VPK L E +++ECVHCGCRGC+
Sbjct: 121 VPK-HLREEKVIECVHCGCRGCA 142
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 234 bits (573), Expect = 5e-62
Identities = 98/143 (68%), Positives = 120/143 (83%)
Frame = +1
Query: 88 MPKVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRYI 267
MPK++ S P+GWELIEPTL EL KMREAE +PH+G+RK E+LWPIFKI+HQ+SRY+
Sbjct: 105 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 164
Query: 268 YDLFYRRKAISRELYQYCLNEKIADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCICR 447
YDL+Y RK IS+ELY++CL++ AD NLIAKWKK GYE LCCLRCIQTRD NFAT C+CR
Sbjct: 165 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 224
Query: 448 VPKSKLEEGRIVECVHCGCRGCS 516
VPK L E +++ECVHCGC+GC+
Sbjct: 225 VPK-HLREEQVIECVHCGCKGCA 246
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 209 bits (510), Expect = 2e-54
Identities = 90/128 (70%), Positives = 106/128 (82%)
Frame = +1
Query: 88 MPKVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRYI 267
MPK++ SR P GWELIEPT+ EL+ KMREAE + H+GKRK E+LWPIF+I HQ+SRYI
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 268 YDLFYRRKAISRELYQYCLNEKIADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCICR 447
YDL+YRRK IS+ELY++CL++ AD NLIAKWKK GYE LCCLRCIQTRD NFAT C+CR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 448 VPKSKLEE 471
VPK EE
Sbjct: 121 VPKHLREE 128
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 208 RKQESLWPIFKIHHQKSRYIYDLFYRRKAISRELYQYC 321
R E LW + K+H+ +S Y DLF + S +L ++C
Sbjct: 867 RGSEELWEVAKLHNCESSYPSDLFDAKSLRSVDLREWC 904
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = +1
Query: 94 KVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKR 210
K+ + R+ +++++ L+E++ K+RE + + HE +R
Sbjct: 505 KIAKERQTSGVKYQMLKQRLDEIDTKLRELKADKHESER 543
>09_06_0307 -
22190310-22190468,22190516-22190569,22190677-22191053,
22191234-22191436,22192798-22192925
Length = 306
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +1
Query: 214 QESLWPIFKIHHQKSRYIYDLFYRRKAIS 300
+ES+W +F++ + +RYI++ F +RK +S
Sbjct: 37 EESMWSLFEVFKKNARYIHE-FNKRKGMS 64
>02_05_0459 +
29217728-29217919,29218095-29218190,29219785-29219895,
29219984-29220293,29220745-29220835,29220976-29221285,
29221469-29221617,29221914-29222418
Length = 587
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 160 LEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRYIYDLFYRRKAISRE 306
++Q +R+ E + EG++ +ESL + QK RY +L +R RE
Sbjct: 89 IQQHLRDIERQQKEGEKFRESLQQQAQAEAQKLRYDDELARKRMQTERE 137
>11_04_0171 + 14471717-14472124
Length = 135
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 95 RFVAVGNHHQKDGN*LSQHLRNLNRKCEKPKLNRTKGNEN 214
RFV V ++ G + HLR L+ + PKL R +G ++
Sbjct: 14 RFVPVFGLPRRGGEWIKDHLRMLHMRGIAPKLTRERGTDD 53
>10_03_0005 +
6920750-6920848,6921283-6921390,6921516-6921564,
6921649-6921699,6921790-6921947
Length = 154
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 196 HEGKRKQESLWPIFKIHHQKSRYIYDLFYRRKAISR 303
H G++++ SL +KI +K RY D FYR ++ +
Sbjct: 7 HHGRKQKLSLPDGWKIEKKKYRYRTDKFYREESTGK 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,802
Number of Sequences: 37544
Number of extensions: 325836
Number of successful extensions: 970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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