Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12i05
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical pr... 252 2e-67
AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein h... 252 2e-67
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 30 2.0
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 30 2.0
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 30 2.0
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 30 2.0
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81098-4|CAB03181.1| 180|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical pr... 29 4.6
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 29 4.6
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 29 4.6
AF324057-1|AAK01418.1| 180|Caenorhabditis elegans Ly-6-related ... 29 4.6
Z81536-1|CAB04365.1| 333|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical pr... 28 6.0
>Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical
protein C07A9.2 protein.
Length = 147
Score = 252 bits (617), Expect = 2e-67
Identities = 103/142 (72%), Positives = 122/142 (85%)
Frame = +1
Query: 94 KVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRYIYD 273
K+RR RK PPEGW+LIEPTLE+ E KMREAETEPHEGKRK E WPIF+IHHQ+SRY+YD
Sbjct: 6 KLRRVRKSPPEGWDLIEPTLEQFEAKMREAETEPHEGKRKTEINWPIFRIHHQRSRYVYD 65
Query: 274 LFYRRKAISRELYQYCLNEKIADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCICRVP 453
++Y++ ISRELY++CL K ADA LIAKWKK GYENLCC++C+ TRD+NF T CICRVP
Sbjct: 66 MYYKKAEISRELYEFCLTAKFADAALIAKWKKQGYENLCCVKCVNTRDSNFGTACICRVP 125
Query: 454 KSKLEEGRIVECVHCGCRGCSG 519
KSKL+ R++ECVHCGC GCSG
Sbjct: 126 KSKLDAERVIECVHCGCHGCSG 147
>AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein
homolog protein.
Length = 147
Score = 252 bits (617), Expect = 2e-67
Identities = 103/142 (72%), Positives = 122/142 (85%)
Frame = +1
Query: 94 KVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQESLWPIFKIHHQKSRYIYD 273
K+RR RK PPEGW+LIEPTLE+ E KMREAETEPHEGKRK E WPIF+IHHQ+SRY+YD
Sbjct: 6 KLRRVRKSPPEGWDLIEPTLEQFEAKMREAETEPHEGKRKTEINWPIFRIHHQRSRYVYD 65
Query: 274 LFYRRKAISRELYQYCLNEKIADANLIAKWKKTGYENLCCLRCIQTRDTNFATNCICRVP 453
++Y++ ISRELY++CL K ADA LIAKWKK GYENLCC++C+ TRD+NF T CICRVP
Sbjct: 66 MYYKKAEISRELYEFCLTAKFADAALIAKWKKQGYENLCCVKCVNTRDSNFGTACICRVP 125
Query: 454 KSKLEEGRIVECVHCGCRGCSG 519
KSKL+ R++ECVHCGC GCSG
Sbjct: 126 KSKLDAERVIECVHCGCHGCSG 147
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 652 HRTTHTYINTSHT--KEYLYQYKKYIIFFSFKLN 557
H+T H N HT K Y+ Q KKY++ F N
Sbjct: 825 HKTIHGNANEHHTIIKNYMRQAKKYLVHMQFGNN 858
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 652 HRTTHTYINTSHT--KEYLYQYKKYIIFFSFKLN 557
H+T H N HT K Y+ Q KKY++ F N
Sbjct: 828 HKTIHGNANEHHTIIKNYMRQAKKYLVHMQFGNN 861
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 652 HRTTHTYINTSHT--KEYLYQYKKYIIFFSFKLN 557
H+T H N HT K Y+ Q KKY++ F N
Sbjct: 827 HKTIHGNANEHHTIIKNYMRQAKKYLVHMQFGNN 860
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 652 HRTTHTYINTSHT--KEYLYQYKKYIIFFSFKLN 557
H+T H N HT K Y+ Q KKY++ F N
Sbjct: 753 HKTIHGNANEHHTIIKNYMRQAKKYLVHMQFGNN 786
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 121 PEGWELIEPTLEELEQKMREAETEPHEGKRKQESLW 228
PEGW+ +E ++++ ETE + ++E++W
Sbjct: 305 PEGWKECRTIIEGMDRRDSGRETEGSQSDNEREAIW 340
>Z81098-4|CAB03181.1| 180|Caenorhabditis elegans Hypothetical
protein K07A12.6 protein.
Length = 180
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 714 IFNQIQDSEMMHLCSCTRILCTEPHIPISIQAIQKSIFI 598
I+ Q+Q +E++ +CSC + C I S + SIFI
Sbjct: 130 IYPQVQANEIVQVCSCDKDGCNFDSINDSTTSKYNSIFI 168
>Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical
protein C08B6.2 protein.
Length = 430
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 619 HTKEYLYQYKKYIIFFSFKLNYN 551
H +Y + Y +++ FSF LNYN
Sbjct: 397 HNIKYFFYYIIFMLLFSFNLNYN 419
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 88 MPKVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQES 222
+PKV R P P+ E E+ +K RE + + EG + ++S
Sbjct: 1443 VPKVEVERSPSPKSSRDREKDREKSREKDRERDRDRREGSKHRDS 1487
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 88 MPKVRRSRKPPPEGWELIEPTLEELEQKMREAETEPHEGKRKQES 222
+PKV R P P+ E E+ +K RE + + EG + ++S
Sbjct: 1457 VPKVEVERSPSPKSSRDREKDREKSREKDRERDRDRREGSKHRDS 1501
>AF324057-1|AAK01418.1| 180|Caenorhabditis elegans Ly-6-related
protein HOT-5 protein.
Length = 180
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 714 IFNQIQDSEMMHLCSCTRILCTEPHIPISIQAIQKSIFI 598
I+ Q+Q +E++ +CSC + C I S + SIFI
Sbjct: 130 IYPQVQANEIVQVCSCDKDGCNFDSINDSTTSKYNSIFI 168
>Z81536-1|CAB04365.1| 333|Caenorhabditis elegans Hypothetical
protein F40D4.1 protein.
Length = 333
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 495 MDTFNNPSLFQLTLRNSTYTISCKICISSLYAAKTTQIFIPSLFPFRY 352
+D + P F L + N TY+I C+S L QI I LF FR+
Sbjct: 176 IDVPSRPGYFVLLIDNPTYSI----CVSLLVIIVCPQIGIVVLFIFRF 219
>Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical
protein F47G9.4 protein.
Length = 808
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 442 CRVPKSKLEEGRIVECVHCGCRGCS 516
C + K++ EE ++ C H CR CS
Sbjct: 8 CTICKNEFEEPILLSCQHTTCRKCS 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,323
Number of Sequences: 27780
Number of extensions: 337447
Number of successful extensions: 1200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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