Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12h16
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.45
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 1.0
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.0
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 27 1.8
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 4.2
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 4.2
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 4.2
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 4.2
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 5.5
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 5.5
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 5.5
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 5.5
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 5.5
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.5
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 7.3
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 7.3
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ... 25 9.7
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +2
Query: 392 LFDEHSKNTDARKLSKQTIEQLKEA----ANQNSELNQKIQALLKK 517
L +HSK + ++S + ++ L++ A QN+ELN+KIQ +K
Sbjct: 208 LQSDHSKVCEKLEVSSRQVQDLEKKLAGLAQQNTELNEKIQLFEQK 253
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 407 SKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLKK 517
S+N D R + EQL+ N+N E K+ ALL +
Sbjct: 47 SENIDLRTTAINLEEQLETVQNENEENKTKLAALLNR 83
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 209 YGVWYRLNTDRNFRLYMFKNHNWVLEAYYGL-GEKI 313
YG W + T +F +Y W++E YG+ GE++
Sbjct: 280 YGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERV 315
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 460 RSCQPKFRIEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENE 633
R C+ F + K S++E+ + + + ER+ R++ L +L K+ + E++ EN+
Sbjct: 292 RCCELAFTTKLKKLSLLERKSVRLGIKERIFRQNLDVLLQLDKSERI-EKIHNAYENQ 348
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 389 GLFDEHSKN-TDARKLSKQTIEQLKEAANQNSEL---NQKIQALLKK 517
GL D+ N TD + SKQTIE L N L N+K Q ++ K
Sbjct: 1310 GLCDDSLSNKTDCTESSKQTIETLMNYENDKQTLEGSNKKRQTVVLK 1356
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 413 NTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 514
NTD R S EQL + + N+ ++ ++ L+K
Sbjct: 720 NTDCRSPSCSDFEQLGQESENNTSISGRVSKLVK 753
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 SVINFCKKCNQGLVSLIRNFHKRS*HFLLCN---LSIMLKKEPKPI 136
SV+ C +CN R H R ++C L I L + P+P+
Sbjct: 276 SVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPL 321
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +1
Query: 475 KFRIEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAR 603
+FR ++ +E+ + + +E ++++ + +EKL++ KAR
Sbjct: 182 EFRASKREMERLERDQELRNKIEERNKKELETIEKLRELAKAR 224
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 168 FREVLIRFLNVIGFGSFFNIIDRLQSKK 85
FRE F+N S N IDR++ KK
Sbjct: 446 FREKNCAFVNFTSLASAINAIDRIKQKK 473
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 380 GFIGLFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQK 496
G+ EH + A L +T++ ++E A + ELNQK
Sbjct: 408 GYAEFLMEHEEYERAATLYAETLKSVEEVALKFIELNQK 446
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 487 EPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDEN 630
+ +DT+ + M+D L RL + L+ L+ A K + ++A +N
Sbjct: 120 DAEDTTEEKSMDDSDKCLRRLKSHKERLLKLLEDAQKEYDTLEAESKN 167
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 263 KNHNWVLEAYYG 298
K HNW+L YYG
Sbjct: 144 KKHNWMLRLYYG 155
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 496 DTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENED 636
D + E + D++ + E R RLE++Q+ +EE+D +E +D
Sbjct: 3 DWRLTENVLDQN-IPETKPRESKTRLEEIQRLALFQEELDIIEELDD 48
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 450 SIVCLESFLASVFFECSSNSPINPGAYSLPSPSH 349
+I ES L + FF SN I+P + SL S +
Sbjct: 256 AIQAFESILQNTFFNGKSNPTIDPNSSSLLSEKY 289
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 484 IEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREE 609
I K+ I N+K +RLS R Q L +L+K H+ EE
Sbjct: 743 ISQKEVEITSLRNEK----DRLSTRLQQVLLELEKQHETNEE 780
>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 248 RLYMFKNHNWVLEA----YYGLGEKIADQKTRQLDL 343
+L+++ + W+L+ Y L EK D+K QLDL
Sbjct: 106 KLWLWSSRFWLLDTLLTIYQLLREKTEDEKEHQLDL 141
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 389 GLFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLKK 517
GL H K D RK ++ ++ + + + L + QAL K+
Sbjct: 167 GLLPAHEKLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKE 209
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 254 YMFKNHNWVLEAYYGLGEKIADQKTRQLDLKVWDGE 361
Y+ K H + A LGE I + +K+W+GE
Sbjct: 131 YVLKGHQSSVWAVLALGEDIFITGSADKLIKIWNGE 166
>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Pet191
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 85
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 366 NCKL--RDL*DCLMNIQRILMQENSPNKQ*NNLKKLPTKIQN*TKRYKHC 509
+CK+ DL +CL++ + +++ S + N +LP + +N + Y C
Sbjct: 4 SCKVIREDLANCLLHSDCMFVKKKSARECLKNKDELPEECKNLIEAYGEC 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,230
Number of Sequences: 5004
Number of extensions: 50030
Number of successful extensions: 159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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