Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h16
         (659 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           25   1.6  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   3.7  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   4.9  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   6.5  

>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
 Frame = -3

Query: 522  IHFFNNACIFWFNSEFWLAASLSCSIV----CLESFLASVFFECSSNSPINPGAYSLPSP 355
            ++   N CI W + +FW    ++   V    CL    A   +  + N    PG  S   P
Sbjct: 1183 LYLRTNTCIEWDDKKFWQKLRIALPHVKKSNCLNKRSAINIYATAGNDYNTPGRPSTLGP 1242

Query: 354  S 352
            S
Sbjct: 1243 S 1243


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 532 SVLERLSRRDAQRLEKLQKAHKAREEVDACDENE 633
           S+ ER+   +  R  +L++  +ARE  +A  E E
Sbjct: 436 SIHERMKLEEEHRAARLREEERAREAREAAIERE 469


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 537 DRMFIIHFFNNACIFWFNSEFWLAASLSCSIVCLESFLASVFFECS-SNSPIN 382
           D M + H+ N A + W +S         CS++     L+ + F  + SNS ++
Sbjct: 717 DCMSLQHYLN-AFVHWCSSNLLRLCPDKCSVISFSHSLSPISFNYTLSNSSLS 768


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 462  SLSCSIVCLESFLASVFFECS 400
            SLS    CLE F A+ F EC+
Sbjct: 952  SLSGPGSCLEDFRATPFIECN 972


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,811
Number of Sequences: 2352
Number of extensions: 12538
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)