Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h16
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p...    31   0.96 
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p...    31   0.96 
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    28   5.1  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    28   5.1  
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF045644-1|AAC02601.1|  543|Caenorhabditis elegans Hypothetical ...    28   5.1  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    28   6.8  

>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
           protein F46F11.1b protein.
          Length = 1225

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 505 IVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDE 627
           ++EK  D+H +LE+L     +     ++ HK+  +++ C+E
Sbjct: 425 VIEKQRDRHQILEKLREGTGE-----EEIHKSEHDLEVCEE 460


>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
           protein F46F11.1a protein.
          Length = 1339

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 505 IVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDE 627
           ++EK  D+H +LE+L     +     ++ HK+  +++ C+E
Sbjct: 425 VIEKQRDRHQILEKLREGTGE-----EEIHKSEHDLEVCEE 460


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 514 KMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENEDY 639
           ++N+K  V+E+++R+     E   K  +   E++ C E+EDY
Sbjct: 258 QLNEKDLVIEKITRKIELLQENNVKKDQRIYELEQCFESEDY 299


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 511 EKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENED 636
           EK   K    E+  R++ +RLEK  +  K  ++ D+ DE+++
Sbjct: 159 EKERRKKEKREKKERKEKKRLEKENRKIKEEDDEDSDDEDDE 200


>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 496 DTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKA 600
           DT+ +E  NDK   +ERL    A++ EKL KA +A
Sbjct: 202 DTANLE--NDKRDEVERLKAELARQAEKLMKAEQA 234


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 511 EKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENED 636
           EK   K    E+  R++ +RLEK  +  K  ++ D+ DE+++
Sbjct: 159 EKERRKKEKREKKKRKEKKRLEKENRKIKEEDDEDSDDEDDE 200


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
            W03A3.2 protein.
          Length = 1540

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 466  CQPKFRIEPKDTSIVEKMNDKHSVLERL 549
            C+PK R  P +  I+E+MN +H ++ ++
Sbjct: 1227 CKPKLRHLPTNKLILEQMNTQHPIVGKI 1254


>AF045644-1|AAC02601.1|  543|Caenorhabditis elegans Hypothetical
           protein F57H12.5 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 487 EPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENEDYF 642
           E KD    E+  D+    +   R D +  +K +K  + +E    C EN  YF
Sbjct: 126 EKKDEEKRERQEDRKEERKENKREDKKEEKKEEKKEEKKEVRKDCRENSVYF 177


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 401  EHSKNTDARKLSKQTIEQLKEAANQNSELNQKI 499
            ++ KN D R+   +T+  L+E   Q  +  QK+
Sbjct: 936  QNEKNNDERRKQMETVRDLEEQLEQEEQARQKL 968


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,969,610
Number of Sequences: 27780
Number of extensions: 278742
Number of successful extensions: 914
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)