Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h04
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    29   0.63 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.4  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   3.3  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    26   4.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   4.4  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   5.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.8  

>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 269 PHNLVEPQSDVGNKLIENLIVYVPTDDDRLYIDKKQFPKF--NSVLVYRHE 415
           P++L+EP   +   L   ++V    DD+++  D+K    F   S++ Y HE
Sbjct: 246 PNSLIEPLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCFEDRSIIGYIHE 296


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 227 FQIQVCISDRFFAFPHNLVEPQSDVGNKLIENLIVY 334
           F  ++ I D    FP NL++  S +    +EN + Y
Sbjct: 403 FSFRLSIHDNSICFPFNLIQELSSLQQLFVENALPY 438


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 269 PHNLVEPQSDVG-NKLIENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRS 442
           P N +  QS V  NK  +++++     +D+    +   P  +SVL  +HE+ V ID ++
Sbjct: 499 PENAIALQSSVPENKAEDSVVLKSSVPEDK---SEDSVPSKSSVLEDKHENSVEIDKKA 554


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 293 SDVGNKLIENLIVYVPTDDDRLYIDK-KQFPKFNSV 397
           SDV + LI+ L+V  P   DRL +D+  Q P FN +
Sbjct: 336 SDVASDLIKKLLVLDP--KDRLTVDEIHQHPFFNGI 369


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +2

Query: 332 YVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRSPKKTAS--ATIVYWNPLMPITEI 505
           Y   DDD    D+  F   N V V +     N  S SP+K+    + I Y         I
Sbjct: 3   YSKKDDDG---DESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYL--------I 51

Query: 506 GAGETRVFSVLLTNNLFYCNTMIIQHENPQMSH*VYV 616
             GE   F       LF+  T + QH++P +   VY+
Sbjct: 52  YTGEH--FQEKQATELFFGITKLFQHKDPSLRQFVYI 86


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 53  YVRDVFLHFNRSEQRTCSTGSVLPLQLRA-RYPIE 154
           Y+  + +HF R + +TCS  S   L L A ++P+E
Sbjct: 759 YMPSLAIHFKRQDIKTCSYASEWFLTLFAYKFPLE 793


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 500 EIGAGETRVFSVLLTNNLFYCNTMIIQH 583
           E+   + R+FS  +   L YCNT+I  H
Sbjct: 439 ELDFEKQRLFSACIEVYLSYCNTLIFLH 466


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 111 DLFYHYNYVPDTLLNTVRVH 170
           D+  H NYVP   L  +R+H
Sbjct: 16  DILEHINYVPSNTLQRLRLH 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,600
Number of Sequences: 5004
Number of extensions: 59492
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)