Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h04
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720     30   1.5  
01_01_0390 - 3014845-3015417                                           29   3.4  
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002     28   6.0  
04_01_0145 + 1689148-1689261,1689431-1689621,1689699-1689796,169...    28   6.0  
05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906     28   7.9  

>08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720
          Length = 239

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 419 DVNIDSRSPKKTASA---TIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHEN 589
           DVN+D R    TA+    T    NP  P+    AG+ R FS       FY +  +  H+N
Sbjct: 22  DVNLDLRLVHSTAAGRQHTAATRNPAPPLA--AAGDDRAFSCTYCRRRFYSSQALGGHQN 79


>01_01_0390 - 3014845-3015417
          Length = 190

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 649 ALHADCISVSGYVNSMGHLGVFMLDDHSVAIKQVVGQEHAKNA 521
           ALH D ++ S ++  +GHLG   L +     K     E A++A
Sbjct: 82  ALHGDSVNPSTFLGGIGHLGAQYLAERIAVTKLREAWEDARDA 124


>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
          Length = 877

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 272 EETQKSDR*YKLESETGIPSRCICL 198
           EE   SD  +KLE E+G PS C  L
Sbjct: 817 EEANTSDHDHKLEIESGAPSSCFDL 841


>04_01_0145 +
           1689148-1689261,1689431-1689621,1689699-1689796,
           1693288-1693443,1694456-1695075,1695204-1695247,
           1695361-1695763,1696295-1696466,1696550-1697079
          Length = 775

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 9   KMKYFLSAIFLIIVFMYAMYFCISIVVNNGRVQRDLFYHYNY 134
           K  Y  + I + +  +Y +Y CIS V N       + Y Y +
Sbjct: 75  KSNYIYALISVTVQDIYTIYSCISNVYNKEEAHDSMIYSYKH 116


>05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906
          Length = 104

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 317 ENLIVYVPTDDDRLYI---DKKQFPKFNSVLVYRHEHDVNIDSRS 442
           +N ++YV TDD +L I      +FP+    LV+  E +++  S++
Sbjct: 39  DNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKT 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,218
Number of Sequences: 37544
Number of extensions: 365415
Number of successful extensions: 933
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)