Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h04
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z70034-9|CAA93849.1|  159|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 12  MKYFLSAIFLIIVFMYAMYFCISIVVNNGRVQR-DLFYHY 128
           M +FL+A+   I + + + F ISIV  N R+ R  LF+ Y
Sbjct: 119 MVFFLTALQYAIFYSFKVIFMISIVERNARLLRLQLFFQY 158


>Z70034-9|CAA93849.1|  159|Caenorhabditis elegans Hypothetical
           protein C18E9.9 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 6   LKMKYFLSAIFLIIVFMYAMYFCISIVVNNGRVQRDLFYHYNY 134
           L + +  S  F+II   Y+  FC+   +N      ++FYH+N+
Sbjct: 60  LDLTFTRSGQFVIIELAYSGAFCVCSALNTIYYFCNIFYHFNF 102


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 329 VYVPTDDDRLYIDKKQFPKFNSVLV 403
           VY+PT   R+  DKK FP F  V +
Sbjct: 173 VYIPTLAVRILNDKKNFPNFKGVAI 197


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 330 CTCPQTTIGCTLTKNNFQN 386
           C CPQ    CT + NN QN
Sbjct: 178 CPCPQNQPACTCSTNNQQN 196


>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   DLKMKYFLSAIFLIIVFMYAMYFCISIVVN 92
           ++K+  F+  + +I+ F +A YF I IV+N
Sbjct: 19  NMKLSQFVDLLAIILAF-FASYFAIKIVIN 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,873,326
Number of Sequences: 27780
Number of extensions: 342131
Number of successful extensions: 1028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)