Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h04
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 437 RSPKKTASATIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNT 568
           R PKK   AT+VY++    +T +G       S+    ++F+  T
Sbjct: 52  RPPKKDGQATVVYFH----VTVMGLDSIDENSMTYAADIFFAQT 91


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 239 VCISDRFFAFPHNLVEP 289
           +C+SD  +  PHN   P
Sbjct: 296 LCMSDLHWQLPHNSTNP 312


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 259 FCVSSQFGGTAKRRRQQINR 318
           FC     GG++K+R+  + R
Sbjct: 94  FCAEIAHGGSSKKRKSIVER 113


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 75  ISIVVNNGRVQRDLFYHYNYV 137
           IS   NN    + L+Y+ NY+
Sbjct: 93  ISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 75  ISIVVNNGRVQRDLFYHYNYV 137
           IS   NN    + L+Y+ NY+
Sbjct: 331 ISNYNNNNNYNKKLYYNINYI 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,918
Number of Sequences: 438
Number of extensions: 4156
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)