Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h03
         (712 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090139-1|AAC35985.1|  105|Homo sapiens immunoglobulin heavy ch...    33   1.3  
BC018706-1|AAH18706.1|  480|Homo sapiens TNS4 protein protein.         32   1.8  
AF090138-1|AAC35984.1|  105|Homo sapiens immunoglobulin heavy ch...    32   2.3  
AK027856-1|BAB55413.1|  480|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AF417488-1|AAN32666.1|  715|Homo sapiens C-terminal tensin-like ...    31   4.1  
AK096878-1|BAC04881.1|  317|Homo sapiens protein ( Homo sapiens ...    30   9.4  
AJ578053-1|CAE17331.1|  317|Homo sapiens VITO1 protein protein.        30   9.4  

>AF090139-1|AAC35985.1|  105|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 105

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 21  MMEPRDPDSLE-IRHNGEFSNQF-PWVDLPYENGAQTLSVIAPKHDSKYDPTLLS 179
           +++P +  SL  + H G FSN F  W+  P   G + +  I P   + Y+P+L S
Sbjct: 11  LLKPSETLSLTCVVHGGSFSNYFWSWIRQPPGKGLEWIGEINPSGRTDYNPSLKS 65


>BC018706-1|AAH18706.1|  480|Homo sapiens TNS4 protein protein.
          Length = 480

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 49  LKSATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDLPSFLT 228
           L+S    SS ++  GS+SL        A  +P +T    R    PPL K+  S  P  +T
Sbjct: 72  LESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHSPPLAKEHASSCPPSIT 131

Query: 229 DFLL 240
           + ++
Sbjct: 132 NSMV 135


>AF090138-1|AAC35984.1|  105|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 105

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 18  LMMEPRDPDSLE-IRHNGEFSNQF-PWVDLPYENGAQTLSVIAPKHDSKYDPTLLS 179
           ++ +P +  SL  + H G FSN F  W+  P   G + +  I P   + Y+P+L S
Sbjct: 10  VLAKPSETLSLTCVVHGGSFSNYFWSWIRQPPGKGLEWIGEINPSGRTDYNPSLKS 65


>AK027856-1|BAB55413.1|  480|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14950 fis, clone PLACE2000371, weakly similar to
           TENSIN. ).
          Length = 480

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 49  LKSATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDLPSFLT 228
           L+S    SS ++  GS+SL        A  +P +T    R    PPL K+  S  P  +T
Sbjct: 72  LESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHSPPLAKEHASICPPSIT 131

Query: 229 DFLL 240
           + ++
Sbjct: 132 NSMV 135


>AF417488-1|AAN32666.1|  715|Homo sapiens C-terminal tensin-like
           protein protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 49  LKSATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDLPSFLT 228
           L+S    SS ++  GS+SL        A  +P +T    R    PPL K+  S  P  +T
Sbjct: 307 LESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHSPPLAKEHASICPPSIT 366

Query: 229 DFLL 240
           + ++
Sbjct: 367 NSMV 370


>AK096878-1|BAC04881.1|  317|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39559 fis, clone SKMUS2000701, weakly similar to
           VESTIGIAL PROTEIN. ).
          Length = 317

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 102 PYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLG 257
           PY   A    V AP  D +Y P L+ A+  +  R   +  P   SP  E+ G
Sbjct: 220 PYPRPAAVHEVYAPHFDPRYGPLLMPAASGRPARLATAPAPAPGSPPCELSG 271


>AJ578053-1|CAE17331.1|  317|Homo sapiens VITO1 protein protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 102 PYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLG 257
           PY   A    V AP  D +Y P L+ A+  +  R   +  P   SP  E+ G
Sbjct: 220 PYPRPAAVHEVYAPHFDPRYGPLLMPAASGRPARLATAPAPAPGSPPCELSG 271


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,015,734
Number of Sequences: 237096
Number of extensions: 2695463
Number of successful extensions: 6879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6879
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)