Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h03
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.71 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.71 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.71 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.71 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   VAALMMEPRDPDSLEIRHNGEFSNQFPWVD--LPYENGAQ 122
           V+ L++    PD   +++  EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   VAALMMEPRDPDSLEIRHNGEFSNQFPWVD--LPYENGAQ 122
           V+ L++    PD   +++  EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   VAALMMEPRDPDSLEIRHNGEFSNQFPWVD--LPYENGAQ 122
           V+ L++    PD   +++  EF  Q  W D  L Y N +Q
Sbjct: 141 VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 180


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   VAALMMEPRDPDSLEIRHNGEFSNQFPWVD--LPYENGAQ 122
           V+ L++    PD   +++  EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 176 K*SRVIFRVMFGCYN 132
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 176 K*SRVIFRVMFGCYN 132
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 176 K*SRVIFRVMFGCYN 132
           K SR++F V F C+N
Sbjct: 344 KYSRIVFPVCFVCFN 358


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 242 RRRKSVRKEGRSETES 195
           R+RKS   E  SETES
Sbjct: 216 RKRKSSTIENESETES 231


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 617 WRPNSIRSLSVCFVPSETI 673
           W P     + + +VPSE I
Sbjct: 97  WNPEEYGGVEMLYVPSENI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,261
Number of Sequences: 438
Number of extensions: 5122
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)