Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h02
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    25   0.67 
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    25   0.67 
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    25   0.67 
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    25   0.67 
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    25   0.67 
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    25   0.67 
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    25   0.67 
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    25   0.67 
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    25   0.67 
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    25   0.67 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    25   0.88 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    25   0.88 
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    25   0.88 
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    25   0.88 
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    25   0.88 
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    25   0.88 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.0  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 305 ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 351


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 305 ERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 351


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 2   EQQSSTETAAVCKNEKLLNKLESSS----YNKSNMDQLIAIVNFLEK 130
           E++ S E   +  N  L N    ++    YNK N ++L   +N++E+
Sbjct: 72  ERERSKEPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 50  LLNKLESSSYNKSNMDQLIAIVNFLEK 130
           L N    S+YN +N  QL   +N++E+
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 50  LLNKLESSSYNKSNMDQLIAIVNFLEK 130
           L N    S+YN +N  QL   +N++E+
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 50  LLNKLESSSYNKSNMDQLIAIVNFLEK 130
           L N    S+YN +N  QL   +N++E+
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 50  LLNKLESSSYNKSNMDQLIAIVNFLEK 130
           L N    S+YN +N  QL   +N++E+
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 50  LLNKLESSSYNKSNMDQLIAIVNFLEK 130
           L N    S+YN +N  QL   +N++E+
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 477 SFNSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAI 367
           S+NS  FA++ T           + +LE DD  R+ I
Sbjct: 206 SYNSDIFAMIGTIFLWLFWPSFNSAALEGDDQQRAII 242


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 202 LLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNSN 104
           LL + H   +  D H  E +V+++F     N+N
Sbjct: 218 LLLYNHARLMSQDNHSKEYLVSIMFSHYDRNNN 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,852
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 23
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)