Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12h01
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 45 9e-06
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 27 2.6
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 3.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 3.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 5.9
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 26 5.9
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.8
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 7.8
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 45.2 bits (102), Expect = 9e-06
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 2/194 (1%)
Frame = +1
Query: 40 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTA 219
+EL+ V+ FY GNY + E + S S + L + ++ R+ +A G Q + T
Sbjct: 10 NELYFVRQYFYSGNYTKLF-EIDTTSMSEKGLELT-EIYMARAKLALGESLESIQSILTQ 67
Query: 220 DPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAAL 399
P + + L + N I+ G S+ + + A +++ A+
Sbjct: 68 KT---PGSAAILALAGEGNMELIIDQ------HGN--SDSVVQTLGAIFQIKNGSFDDAM 116
Query: 400 KILHNA-ESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGG- 573
+L + E+LE A + L ++ + A + LK D D+ + QLAQ+W+ ++ GG
Sbjct: 117 DLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGGV 176
Query: 574 PGIQDAHYSVMELS 615
DA Y EL+
Sbjct: 177 ESYNDAFYVFEELN 190
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 391 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTL 531
A +K+ H+ + L T+ L AM DL +K +LLQ I DDG +
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +1
Query: 82 YQQAINEAQSVSPSTPLVALQRD-AFLYRSYI-AQGNYRIVQQELKTADPMLQPLKSLVD 255
Y + ++ S +T L LYR+ +G+Y IVQ+ ++A+P+ +
Sbjct: 635 YSPSHKDSNKTSRNTSKEGLPSSPTMLYRTTSNTRGDY-IVQRTQQSANPLTNIEPQDMS 693
Query: 256 YLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATI 366
L D N S +VAD + T ++ + +A+ +
Sbjct: 694 NLSTDINASDVVADSTNSILYPTSTASSVANTIASDV 730
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 320 VRNCPMKYS*LWLQQFTIMKIIMKLH*KSFI 412
+R CP + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +1
Query: 364 IYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQL 540
++++ Y+ L + N S++ T + LL N L+ K LKL ++I+D TL QL
Sbjct: 381 VHWNSTVYQELLNLKSNNSSVD-GVKTRRQLLEENAL-LSHKVLKLTEEIQDLETLNQL 437
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 5.9
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +1
Query: 259 LLPDANKSA--IVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLEL 432
L DA K+A IV + ++ G + +AT+Y+ A+ + H A +L +
Sbjct: 166 LQKDATKAADLIVKALLSKQFNGDDEQKSRLFEQSATLYFQAGTPSYAVPLYHEALNLTM 225
Query: 433 RAFTLQCLLAMNRPDLARKQLKLLQ--DIEDDGTLTQLAQAW 552
+ L+ MN +LA L + D + TL + +Q+W
Sbjct: 226 ANPSCHGLILMN--NLATSLLAQTETVDKKHHETLMKQSQSW 265
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 178 QGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAI 288
Q Y++ ++ L+P+K +DYL+ AN+ I
Sbjct: 749 QSTYKVEMHHVRQMKN-LKPIKGTLDYLMAKANRKQI 784
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 346 LIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCL 456
LI+ Y H Y + ++ILHN E +L F +CL
Sbjct: 214 LIMKQFSYSHHMGYISEIRILHN-EYEKLLKFVRECL 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,882
Number of Sequences: 5004
Number of extensions: 49767
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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