Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12h01
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...   107   1e-23
Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    29   4.1  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    29   4.1  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    29   4.1  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score =  107 bits (256), Expect = 1e-23
 Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 2/196 (1%)
 Frame = +1

Query: 40  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTA 219
           D+LF ++N F++G+YQ  I EA   S        ++D +LYRSYIAQG   I  +E+  A
Sbjct: 3   DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62

Query: 220 DPM--LQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEA 393
                L  ++   ++    A K  I+A++   VA    + +EI  ++AATI    D  + 
Sbjct: 63  TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQD 121

Query: 394 ALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGG 573
           A + +   E LE RA  +  L+ MN+  LA  ++K +  I++D TL+QLA A +      
Sbjct: 122 AFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGAS 181

Query: 574 PGIQDAHYSVMELSER 621
             ++DA Y   E+S++
Sbjct: 182 GKVKDALYIYSEMSDK 197


>Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical
           protein C07E3.8 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 376 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 471
           E  +E   +  H+ ESLE+ +FT+ CLL  NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 184 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 354
           N +  ++ ++T  P L     ++D   + +   +KS  +AD+D         +  + +  
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421

Query: 355 AATIYYHEDNYEAALKILHNAESLEL 432
            A +Y +E  YE+ALKIL + +  ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 184 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 354
           N +  ++ ++T  P L     ++D   + +   +KS  +AD+D         +  + +  
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421

Query: 355 AATIYYHEDNYEAALKILHNAESLEL 432
            A +Y +E  YE+ALKIL + +  ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 184 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 354
           N +  ++ ++T  P L     ++D   + +   +KS  +AD+D         +  + +  
Sbjct: 418 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 469

Query: 355 AATIYYHEDNYEAALKILHNAESLEL 432
            A +Y +E  YE+ALKIL + +  ++
Sbjct: 470 LAHLYLYERKYESALKILMSCQDFQI 495


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 325 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 489
           E +NE+F ++A+ I Y  DN+ A++      ++L +     Q L  + +    +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 325 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 489
           E +NE+F ++A+ I Y  DN+ A++      ++L +     Q L  + +    +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/83 (21%), Positives = 36/83 (43%)
 Frame = +1

Query: 166  SYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIF 345
            +YI +  YR +  E  T  P +Q LK  V++      K     ++   V  GT    +  
Sbjct: 1184 AYIRENGYRSILSEKFTLTPGVQALKLRVEH----KTKPTFYYNLGVEVRPGTGRYKDTQ 1239

Query: 346  LIVAATIYYHEDNYEAALKILHN 414
            +++  + +  ++    AL + H+
Sbjct: 1240 VVLLTSRFLLQNQSTVALSVCHH 1262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,896
Number of Sequences: 27780
Number of extensions: 284131
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)