Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12g18
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 74 1e-13
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 30 2.2
10_08_0714 + 20081801-20082130,20082205-20082597 29 2.8
06_01_1080 + 8836289-8836347,8836525-8836783,8836911-8837444,883... 29 2.8
10_08_0690 - 19913111-19913488,19913585-19913941 28 6.6
05_01_0234 - 1743784-1744017,1748103-1749068 28 6.6
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247... 28 8.7
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 73.7 bits (173), Expect = 1e-13
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 7/176 (3%)
Frame = +3
Query: 216 LGGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNHNKLIFQNLPVHMRRRVMSH--NSK 389
+ G P + +FAA+R+ E+ ++ ES+ +L P RRR H ++K
Sbjct: 1 MAGVPPPPRQLDVRRFAAARAGELRSLHESVSARLAGRL---TQPRSARRRTTGHLPSNK 57
Query: 390 RLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQ---NLLDEYNRRQKRHKWLETHIWH 560
R + R+A +G ++ RPSR+ RRR + N + ++ + L TH+WH
Sbjct: 58 RRRRRSRDAEAA----DGTEEEEGRPSRRVRRRRELAGNTAEGFSAAGDGARRLRTHLWH 113
Query: 561 AKRFHMIEKWGYRLAYAP--CDKAFRACYRATSAHCLLQDISYVTPIEINGPVDTI 722
AKRF M +WG+ L + R + ++ D SY TP+E++GP D++
Sbjct: 114 AKRFSMERRWGFVLPIGAHGRGRGSRTVLKWLKNGTVVHDASYFTPVELDGPEDSL 169
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 363 RRVMSHNSKRLPIK--LREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKRHK 536
+R+ N K K + A TK F ++QK P++KY R ++ + ++K K
Sbjct: 242 KRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKDPAKKYPHRA--VVYVHTHKRKSDK 299
Query: 537 WLETHIWHAKR 569
+ H+ + KR
Sbjct: 300 NINGHVDNLKR 310
>10_08_0714 + 20081801-20082130,20082205-20082597
Length = 240
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 195 AAEFDATLGGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNHNKLIFQNLPVHMRRRVM 374
AAE + L GT P+ + + + + E N ++L+ + PVH + VM
Sbjct: 2 AAEGELKLLGTWASPYVSRVKLALHLKGLSYEYVVEEDHFNNKSELLLSSNPVHKKVPVM 61
Query: 375 SHNSK 389
HN K
Sbjct: 62 IHNGK 66
>06_01_1080 +
8836289-8836347,8836525-8836783,8836911-8837444,
8837527-8837636,8843938-8844129,8845062-8845203
Length = 431
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Frame = +3
Query: 357 MRRRVMSHNSKRLPIKLREAHTKQFKN-NGFAVKQKRPSRKYRRRPQNL----LDEYNRR 521
M RR +H S+ + +++ H+ + +G +++K P + R L L EYN+R
Sbjct: 311 MIRRADAHPSRPYHLCIQDTHSGAREGYDGLELREKDPEVVAKDRLGELMQMGLHEYNQR 370
Query: 522 QKRHKWLETHIWHAKRFHMIEKWGYRLAYAPCDKAFRACYRATSAHCLLQDISYVTPIEI 701
+ E R IE W + ++A Y AT YV P ++
Sbjct: 371 RHAENLEEKRRKEESRHLPIENWNITEGGLKSEINYKAIYNATCG-AQFTITEYVLPADL 429
>10_08_0690 - 19913111-19913488,19913585-19913941
Length = 244
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 216 LGGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRL 395
LGG PF+ + + +E + E++ + + +L+ ++ PVH + V+ H+SK L
Sbjct: 18 LGGWAS-PFTNRVVVALKLKGVEHEMLQETVGKKS--ELLLRSNPVHKKFPVLLHHSKPL 74
Query: 396 PIKL 407
P L
Sbjct: 75 PESL 78
>05_01_0234 - 1743784-1744017,1748103-1749068
Length = 399
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 474 KYRRRPQNLLDEYNRRQKRHKWLETHIWHAKRFHMIEKWGYRLAYAPCDKAFRACYRATS 653
K RR D+ RR+KRHK + +W +M++ W ++L D ++
Sbjct: 74 KITRRVAKDDDKTMRRRKRHKLIVMAMW-----YMLQDW-FQLPTRESDDLYKLIAEEEV 127
Query: 654 AHCL-LQDISYVTPIEINGP 710
H L L I+++ ++ GP
Sbjct: 128 HHLLHLVHIAHLAKVDSAGP 147
>04_04_1334 -
32723950-32724121,32724527-32724558,32724665-32724708,
32724962-32725123,32725984-32726422
Length = 282
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 88 TKYTYLIKDTIQSILESKGSQIKSIKXXXXXXSRWKQQN 204
T Y L + IL+SKG IK K +WK++N
Sbjct: 244 TNYIRLFWLGVYRILQSKGGLIKVAKGLIMYGCKWKKEN 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,051
Number of Sequences: 37544
Number of extensions: 320384
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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