Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12g18
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    96   3e-20
AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical...    29   3.4  
AF016663-4|AAC70879.1|  126|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
 Frame = +3

Query: 258 KFAASRSIEIAAMTESIQR--------TNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLRE 413
           KF  +R+  IA + ++I          T   +   Q LP HMRRR M+++ +R P  +RE
Sbjct: 7   KFVEARTNSIAQLLKAIDNDALVSGEVTKGPRTAAQRLPRHMRRRAMAYDIRRFPRTMRE 66

Query: 414 AHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQK-RHKWLETHIWHAKRFHMIEKW 590
                  +      +K PSR  RR+  N   ++ R    +  WL TH+WHAKRF MI+KW
Sbjct: 67  FAAAHLISKH---AKKCPSRFARRKSANSRTKFGRSTSTKGIWLSTHVWHAKRFRMIQKW 123

Query: 591 GYRLAYAPCDKAFRACYRATSAHCLLQDISYVTPIEI 701
           G++LA     + FRA  R ++ +C+++D SY T + I
Sbjct: 124 GFKLADRSFQRGFRAVLRDSNKNCVIRDRSYYTCVTI 160


>AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical
           protein F45C12.5 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 568 LFACHICVSNHLWRFCRRLYSSNRFCGRRLYFLEG----RFCFTANPLF 434
           +FAC + +  HL  + R+ YS   FC +R     G       FT N +F
Sbjct: 409 VFACVLGILLHLRFYKRKQYSIESFCSKRYLMAAGMLFINVLFTGNSIF 457


>AF016663-4|AAC70879.1|  126|Caenorhabditis elegans Hypothetical
           protein F21E9.4 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -1

Query: 716 IYWTIYFYRSDIRDVL*QTVSRCSSVTSSKCFITRCIS*TVTPLFYHVKSFCMP 555
           IY  I   +  I  +   T+S CS V        + I  T TP   HV   C P
Sbjct: 59  IYLNISTPQDCIHKIFRMTISFCSQVECQNMEAMQKICNTTTPTIKHVGELCCP 112


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 461 FLLYSKPVIFKLLCMSFS 408
           F L++ P+IF +LCM FS
Sbjct: 105 FALFNLPLIFSMLCMEFS 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,235,129
Number of Sequences: 27780
Number of extensions: 301440
Number of successful extensions: 855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)