Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12g12
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    29   0.49 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.1  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   8.0  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   8.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.0  

>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 380 NRIRKKMQWKLSLLKYRIAVNILLCLMMV 466
           NR+RKKM WK   ++  I + I++ L+++
Sbjct: 82  NRVRKKMWWKDMRMRLCIIIGIIILLVVI 110


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 11/178 (6%)
 Frame = -3

Query: 707 TSTTRPTCGSRSALSAFTGRLVPSPSLSSDWARPLLPR---------RPAMTGVEKC--S 561
           TST+ P  G  S+LS      VP P+ +S  + P+ P           P  T    C  S
Sbjct: 117 TSTSIPPTGGSSSLSTPITPTVP-PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTS 175

Query: 560 GCVNGN*SKVSLSLKCLPLFRQSADRLNVVMSPSSNTTVY*LQSCILVMTASIASFFGSC 381
             +       SLS    P    ++     +  P ++T+     S  L  T++      SC
Sbjct: 176 TSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST------SC 229

Query: 380 FTSTVLPILNVPFITSSFTVIVPPPALSVXXXXXXXXXXXXLASQNAPLYFALTSVPT 207
            TST +P      +++  T  VPP + S               + ++PL    TS  T
Sbjct: 230 TTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTT 287


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 384 LFHFYSTSNPQCTFYYIIIHSNCSSTSFKCNFAFNIPYNFFYFSLTECTLV 232
           L  FY  SNP  TF   I  S C  T+    F+++   N  YF ++   L+
Sbjct: 628 LLSFYEYSNPSATF---IDFSFCPLTTIDPAFSYS---NLVYFDISHAKLI 672


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 468  VTIIKHNSILTAILYFSNDSFHCIFFRILFHF 373
            +++I H+ +L  +L  +ND  + +F  IL  F
Sbjct: 1761 LSLISHSYLLPKVLLVNNDKINDLFSEILMSF 1792


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 514 HFNESETLDQLPLTHPEHFS 573
           HFN  +TL +LPLT    +S
Sbjct: 927 HFNPKQTLSELPLTRFYRYS 946


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 647 LVPSPSLSSDWARPL 603
           L PSP+LS DW R L
Sbjct: 47  LKPSPALSKDWIRKL 61


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 371 TVLPILNVPFITSSFTVI 318
           T LP+ N P IT+ FTV+
Sbjct: 108 TFLPLKNKPLITTKFTVL 125


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
 Frame = -2

Query: 426 YFSNDSF-----H-CIFFRILFHFYSTSNPQCTFYYIIIHSNCSSTSF------KCNFAF 283
           +F ND F     H   FF  +  +Y T      F+++++ + C   ++        N+ +
Sbjct: 212 FFMNDHFLVHIHHPASFFEKMHMYYKTGKTDNNFHFLLVATLCLGYTYMPDESPSANYPY 271

Query: 282 NIPYNFFYF 256
           +  Y ++Y+
Sbjct: 272 HEAYEYYYY 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,985
Number of Sequences: 5004
Number of extensions: 62549
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)