Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12g12
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0208 - 23605701-23607149                                         32   0.39 
12_02_0594 - 20883859-20884200,20884250-20884528,20884931-208851...    29   2.7  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    29   3.6  
08_01_0577 + 5132876-5132894,5134352-5134845,5134937-5135162,513...    28   6.3  
06_03_1240 - 28612250-28613704                                         28   6.3  

>04_04_0208 - 23605701-23607149
          Length = 482

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 193 PPYLPVGTDVSAKYKGAFCEAKIKKVVRNIKCKVTLK-AGGGTITVNDDVI 342
           PPY  V    +AK     CE  + ++ RN  C VTL+  GGG   V+++ I
Sbjct: 310 PPYNTVSAFTNAK-NIVLCEGNLYQIWRNASCTVTLQLPGGGHRRVSENEI 359


>12_02_0594 -
           20883859-20884200,20884250-20884528,20884931-20885106,
           20885254-20885725
          Length = 422

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 NDDVIKGTLRIGSTVEVKQDPKKDAMEAVITKIQD-CSQYTVVFDDGD 468
           + D++K    +G+T    QD + D  E +  K+ D C Q+ +   D D
Sbjct: 310 DQDIVKAISYLGTTKRRLQDLRNDGWEGMFNKVIDFCIQHDIELPDMD 357


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 360 WKYCRSETGSEKRCNGSCH 416
           W  C SETG    C  SCH
Sbjct: 368 WLVCSSETGDRDCCESSCH 386


>08_01_0577 +
           5132876-5132894,5134352-5134845,5134937-5135162,
           5135695-5135917,5136315-5136528,5136769-5136806,
           5136977-5137142
          Length = 459

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 707 TSTTRPTCGSRSALSAFTGRLVPSPSLSSDWARPLLPRRPAMT 579
           TST    CGS   L ++  RLV +P    D+ + L P   A T
Sbjct: 135 TSTLSLACGSAMMLVSWATRLVEAPKTDLDFWKVLFPVAVAHT 177


>06_03_1240 - 28612250-28613704
          Length = 484

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 493 LCLKSGRHFNES-ETLDQLPLTHPEHFSTPVIA 588
           L  +S RH   S   LD LP THP   STP +A
Sbjct: 92  LLARSRRHAVLSFRLLDSLPPTHPHLLSTPALA 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,474
Number of Sequences: 37544
Number of extensions: 396041
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)