Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12g12
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -2

Query: 459 IKHNSILTAILYFSNDSFHCIFFRILFHFYSTSNPQCTFYYIIIHSNCSST--SFKCNFA 286
           +K + IL      S+D     FF  L      +N   T+ YI   S  +    S+  N +
Sbjct: 150 LKTDKILRIYPLKSSDQTSDSFFVDLVIDVDPNNCDNTYAYISDLSGYALVVYSWAKNDS 209

Query: 285 FNIPYNFFYF 256
           + I +NFFYF
Sbjct: 210 WRITHNFFYF 219


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 250 EAKIKKVVRNIKCKVTLKAGGGTITVNDDV 339
           E  IKK + N  C +T       I  ND++
Sbjct: 65  EGNIKKYLTNYSCFITCALEKSHIIQNDEI 94


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 351 IEDWKYCRSETGSEKR 398
           I +WKY   + GSE+R
Sbjct: 35  IHEWKYFDYDFGSEER 50


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -2

Query: 438 TAILYFSNDSFHCIFFRILFHFYS----TSNPQCTFY---YIIIHSNC 316
           +++L   +D   C+ F +LF  +S     +  Q T++   YII  S C
Sbjct: 4   SSVLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLC 51


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -2

Query: 438 TAILYFSNDSFHCIFFRILFHFYS----TSNPQCTFY---YIIIHSNC 316
           +++L   +D   C+ F +LF  +S     +  Q T++   YII  S C
Sbjct: 4   SSVLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLC 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,065
Number of Sequences: 438
Number of extensions: 4718
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)