Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12g09
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   0.61 
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   3.3  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   4.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   5.7  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   5.7  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   5.7  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   5.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   7.6  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    24   10.0 
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    24   10.0 
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    24   10.0 

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 164 ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 259
           ERG T  PK   K+   K  I A +  +TTA+
Sbjct: 17  ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 377 AYLIWDTIVFVHF 339
           A+++W  I+FVHF
Sbjct: 401 AFIVWTAIIFVHF 413


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 226 DSFLVLLQLFRLFWGFCYAALS*RHGMAAAFFCRRF 119
           +  L +  LF LFWG C  A +    +   +F + +
Sbjct: 446 NGLLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTY 481


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   GGGNFNEADRQKLDLVHTLVNDIKNILTGTLTTK 104
           GGG F    ++ + L+H L+    ++L    T K
Sbjct: 729 GGGRFESLYKEVMPLLHALLEAFNSLLISARTPK 762


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 282 PWFCKEETSAVVRSVCSAAIAFLYCCNFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDM 109
           P   K  +++V +S+     +F+    FS F  G   PR   V   PP+    VL D+
Sbjct: 286 PEISKSVSTSVEQSIAEYLPSFIKEAAFSTFTLGSKAPRIDRVRTHPPVERDVVLMDV 343


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 355 SFLFIF*Y-YNHIL*SFQLLKNGTLPVVLQRRNICCGAQRLLGSDSFLVL 209
           S LF+F   YN+I+ S+Q L    L      R    G   L+G   ++ L
Sbjct: 452 SLLFVFFVSYNYIIDSYQKLAASALAAATLVRYAASGGMSLVGRPMYVNL 501


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 28  TDKNWTSCTLWLTIS 72
           T KNW + T WLT S
Sbjct: 322 TSKNWEAYTAWLTSS 336


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 225 IAFLYCCNFSDFFGGFVTPRSRNVMAWPPLFFVGVLS 115
           + F  CC +S F+   V    RN+      F  GVLS
Sbjct: 493 LVFEMCCGWSPFYAPDVQQMYRNIAFGKVRFPKGVLS 529


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 12  NFNEADRQKLDLVHTLVNDIKNILTGTLTTK*ACPTK 122
           NF EA R K ++VH+L N+ K +L     T    PT+
Sbjct: 584 NF-EAPRYKTNIVHSLNNEQKYVLEVKNGTSEKNPTR 619


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 113 TCLFCCQRSREYIFDIVNQSVH 48
           T LF C  S+ Y+  +VNQ V+
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVY 409


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 206 QQYKKAIAAEQTLRTTADVSSLQNHGESA 292
           Q    A+  EQ      D   LQN GESA
Sbjct: 117 QDVTDAVPEEQDFTEFEDEQELQNQGESA 145


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 6   GGNFNEADRQKLDLVHTLVNDIKNILTGTLTTK*ACPTK 122
           GG      R+  DLVHT+   ++++  G  TTK A   K
Sbjct: 97  GGGMPRGPRKGKDLVHTIKVTLEDLYRGK-TTKLALQKK 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,069
Number of Sequences: 5004
Number of extensions: 32881
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)