Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12g06
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   1.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   1.8  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   5.4  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   7.2  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    23   7.2  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    22   9.5  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 130 LCVCVFYLSHKMDVWQKSQPILVFFSYITRFNLILKLIITS 8
           LC+  F + H + VW    P L++ +       + K +I++
Sbjct: 712 LCISCFIMRHHLFVWSVFSPKLLYNASWASMYFLAKCLIST 752


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 130 LCV-CVFYLSHK-MDVWQKSQPILVFFSYITRFNLILKLIITSSE 2
           LCV  +F++ ++ +++W      +VF  +I +  LILK   T++E
Sbjct: 77  LCVKSIFHVHNESVNIWTHLFGAIVFLFFIFKSELILKRDTTTAE 121


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 139 IKTLCVCVFYLSHKMDVWQKSQPILVF 59
           I+T C+   Y +H   +W KS  I+ F
Sbjct: 69  IETFCLDSNYSTHVYSLWAKSFLIIQF 95


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 73  PILVFFSYITRF 38
           P+L+ FSY+TR+
Sbjct: 332 PLLLIFSYLTRY 343


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 49  CKKKTLILVVIFARRPFYVINKTHTHTKFLL 141
           CKK    ++ +    P Y  N+  TH  +LL
Sbjct: 230 CKKNHYSVITLDLDVPNYETNRFETHCNWLL 260


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 118 VFYLSHKMDVWQKSQPILVF 59
           VF L HKMD+ Q+    LVF
Sbjct: 117 VFCLIHKMDLVQEDLRDLVF 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,291
Number of Sequences: 5004
Number of extensions: 7407
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)