Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12f18
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 258 4e-70
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 223 2e-59
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 127 2e-30
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 114 1e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 102 4e-23
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 100 2e-22
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 97 3e-21
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 95 1e-20
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 86 4e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 86 4e-18
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 85 1e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 83 3e-17
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 81 1e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 80 3e-16
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 79 5e-16
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 78 1e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 77 2e-15
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 72 6e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 8e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 55 1e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 53 4e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 6e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.002
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 3.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.1
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 4.1
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.4
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 7.2
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 7.2
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 9.5
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 9.5
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 258 bits (633), Expect = 4e-70
Identities = 120/166 (72%), Positives = 143/166 (86%)
Frame = +1
Query: 154 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 333
E + NVE TSEDV + +F+ M L+++LLRGIY YG+E PSA+Q R+I+ I KGRDVIA
Sbjct: 4 EIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 334 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 513
QAQSGTGKTATFSI ILQ++D ++R+TQ LILSPTRELA QIQ V+LALGD MNVQCHAC
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 514 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
IGGT++G DI+KLDYGQHVVSGTPGRV DMIRRR LRTR++KML+L
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLIL 169
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 223 bits (544), Expect = 2e-59
Identities = 108/166 (65%), Positives = 134/166 (80%)
Frame = +1
Query: 154 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 333
+ L + +T+ D EVI TFD M L+ ELLRGIY YGFE+PSAIQQR+I+PI+ RDV+A
Sbjct: 3 DQLEDSVIETNYD-EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLA 61
Query: 334 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 513
QAQSGTGKTATFSIS+LQ +DT+L++ Q LIL+PTRELA QIQKV++ALGD MNV+CHAC
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHAC 121
Query: 514 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
IGGT + +D+ L G HVV GTPGRV DMI+RR L T +++M VL
Sbjct: 122 IGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVL 167
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 127 bits (306), Expect = 2e-30
Identities = 66/136 (48%), Positives = 88/136 (64%)
Frame = +1
Query: 211 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 390
F+ L+ ELL GI+ GFE+PS IQ+ SI + GRD++A+A++GTGKTA F I L+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 391 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHV 570
+DT + Q LIL PTRELA Q +V LG MNV+ GGT L +DI +L+ H+
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
Query: 571 VSGTPGRVFDMIRRRV 618
V GTPGRV D+ + V
Sbjct: 166 VVGTPGRVLDLAGKGV 181
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 114 bits (274), Expect = 1e-26
Identities = 62/179 (34%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Frame = +1
Query: 121 SEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSI 300
S + N+ + L++++ D + + + +F+ + L+ ELL+GIY+ F+KPS IQ++++
Sbjct: 86 SNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Query: 301 LPIVKG--RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVIL 474
++ R++I Q+QSGTGKTA F++++L +D ++ + Q + L+P+RELA QI V+
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 205
Query: 475 ALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
+G + V+ G + K+D +V GTPG V D+++RR L R IK+ VL
Sbjct: 206 EMGKYTEVK--TAFGIKDSVPKGAKID--AQIVIGTPGTVMDLMKRRQLDARDIKVFVL 260
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 102 bits (245), Expect = 4e-23
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Frame = +1
Query: 211 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 390
F SMGL LLR I+ GF+ P+ IQ+++I +++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 391 LDTTL--RETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ 564
L +TL T+ LILSP RELA Q KV+ +++ A +GG +L E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 565 HVVSGTPGRVFDMIRRRVLRTRSIKMLV 648
+V TPGR + L SI+ +V
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVV 218
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 100 bits (240), Expect = 2e-22
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Frame = +1
Query: 226 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 405
L+ ELLR I GFE PS +QQ I + G DV+ QA+SG GKTA F +S LQ ++
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 406 RETQVLILSPTRELATQIQKVILALGDFM-NVQCHACIGGTNLGEDI---RKLDYGQHVV 573
E VL+L TRELA QI+ ++ +V+ GG N+ +D+ + H+V
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 574 SGTPGRVFDMIRRRVLRTRSIKMLVL 651
TPGR+ ++R ++L+ S+K VL
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVL 203
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 96.7 bits (230), Expect = 3e-21
Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Frame = +1
Query: 106 RKMTSSEVSS--NRKI-----LSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYG 264
+K+T + +S N+KI SE S S++ E TF +G+ DEL G
Sbjct: 6 KKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLG 65
Query: 265 FEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRE 444
F+ P+ IQQ +I ++ RDVI AQ+G+GKTA F++ ++Q L ++L+PTRE
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRE 125
Query: 445 LATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVL 621
LA QI + A+G + V+ +GG ++ L HV+ TPGR+ D + +
Sbjct: 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF 185
Query: 622 RTRSIKMLVL 651
+++K L++
Sbjct: 186 SLKNLKYLIM 195
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 94.7 bits (225), Expect = 1e-20
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +1
Query: 208 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 387
+F SM L +L+G+ GFE P+ IQ ++I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 388 TL---DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 558
L + T+VLIL PTRELA Q V + F ++ CIGG +L ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 559 GQHVVSGTPGRVFDMIRR-RVLRTRSIKMLVL 651
+V TPGR D +R + +I+++V+
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVM 411
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 86.2 bits (204), Expect = 4e-18
Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 5/167 (2%)
Frame = +1
Query: 166 NVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQS 345
N+ ++ D+E F + L + + + I GFE + IQ+RSI P++ GRDV+ A++
Sbjct: 79 NLNASSTSDIE---KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 346 GTGKTATF---SISILQTLDTTLRE-TQVLILSPTRELATQIQKVILALGDFMNVQCHAC 513
G+GKT F +I +L L R T V+I+SPTRELA QI V L + +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIV 195
Query: 514 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRSIKMLVL 651
IGG N + KL G +++ TPGR+ D ++ + R+++ LV+
Sbjct: 196 IGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVI 242
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 86.2 bits (204), Expect = 4e-18
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +1
Query: 208 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 387
+F +G+ L+ + +P+ IQ+ I I++GR+ I A++G+GKTA F++ I++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 388 TLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQH 567
LIL+PTRELA QI + ALG +N++ +GG ++ L H
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 568 VVSGTPGRVFDMIR----RRVLRTRSIKMLVL 651
VV TPGR+ D+IR + R IK LV+
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVM 159
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 84.6 bits (200), Expect = 1e-17
Identities = 50/167 (29%), Positives = 92/167 (55%), Gaps = 8/167 (4%)
Frame = +1
Query: 142 KILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGR 321
+IL ED N+ + + ++ GL E+L+ + +++PS+IQ+ +I +++ +
Sbjct: 229 RILKEDY-NISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Query: 322 DVIAQAQSGTGKTATFSISILQTLDTT--LRETQV------LILSPTRELATQIQKVILA 477
D+I A++G+GKTA F I ++ + L E+ + ++L+PTRELA QIQ
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347
Query: 478 LGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRV 618
+ + +C + +GG E ++ G H+V TPGR+ D + RR+
Sbjct: 348 FAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRL 394
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 83.4 bits (197), Expect = 3e-17
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Frame = +1
Query: 202 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 381
+ TF+ G + +L+ + GFE P+ IQQ++ + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 382 L-----QTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIR 546
+ Q L + VL+L+PTRELA QIQ+ G ++ GG G IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 547 KLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
L G + TPGR+ DM+ R + LVL
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVL 275
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 81.4 bits (192), Expect = 1e-16
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 18/172 (10%)
Frame = +1
Query: 190 DVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF 369
D+E + F S L LL+ I G+ +P+ +Q+ SI + GRD++A AQ+G+GKTA F
Sbjct: 164 DIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGF 223
Query: 370 SISIL--------------QTLDTTLRETQ----VLILSPTRELATQIQKVILALGDFMN 495
IL Q R + LIL+PTREL QI +
Sbjct: 224 LFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSW 283
Query: 496 VQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
V+ A GG ++ IR++D G ++S TPGR+ D+I R + +IK LVL
Sbjct: 284 VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVL 335
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 79.8 bits (188), Expect = 3e-16
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Frame = +1
Query: 118 SSEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRS 297
+ E + +R I ++S + +SE++ I FD + + +L G+ Y ++P+ IQ +
Sbjct: 138 NDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNY--KEPTPIQAAT 195
Query: 298 ILPIVKGRDVIAQAQSGTGKTATFSISILQTLD---TTLRETQVLILSPTRELATQIQKV 468
++ GRDV+ A++G+GKT F I LQ L+ +VL++SPTRELA Q +
Sbjct: 196 WPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYEN 255
Query: 469 ILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLV 648
+ +L N++ GG E R V+ GTPGR+ D+I + + LV
Sbjct: 256 LNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVIIGTPGRLLDLINDGSIDCSQVGYLV 314
Query: 649 L 651
L
Sbjct: 315 L 315
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 79.0 bits (186), Expect = 5e-16
Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
Frame = +1
Query: 202 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 381
+ ++ GL + + I + G+EKP++IQ ++I I GRDVI A++G+GKT F + +
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
Query: 382 LQTL-DTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIR 546
+ + D +T +I++PTRELA QI + +N++ GG + + I
Sbjct: 477 FRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 547 KLDYGQHVVSGTPGRVFDMIRRRVLRTRSI 636
L G +V TPGR+ D++ R ++
Sbjct: 537 DLKRGAEIVVCTPGRMIDVLSANAGRVTNL 566
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 77.8 bits (183), Expect = 1e-15
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Frame = +1
Query: 109 KMTS--SEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 282
+MTS S+V+S L + S V+V + L E+L + GF KP
Sbjct: 89 EMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDV-SAWAHFSLSPEMLGSLSKAGFSKPMP 147
Query: 283 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL--DTTLRETQVLILSPTRELATQ 456
IQ I G D+I +A +G+GKT F I IL+ + + Q L+++PTRELA Q
Sbjct: 148 IQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQ 207
Query: 457 IQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVL--RTR 630
I + + N++ + GG + + R L+ HVV TPGR++ +I L +
Sbjct: 208 ICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK 267
Query: 631 SIKMLVL 651
IK LVL
Sbjct: 268 KIKCLVL 274
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 77.4 bits (182), Expect = 2e-15
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Frame = +1
Query: 208 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 387
TF L L R I+ FEKP+++Q +I ++G+D++AQA++G+GKTA + I IL+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 388 TL------DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 549
L D R L+L PTRELA Q+ V+ L F + TN + +++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 550 ---LDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
LD +V TP R + VL +K LV+
Sbjct: 135 PLLLDL-PDIVIATPSRCVVHVASGVLPLDKLKFLVI 170
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 72.1 bits (169), Expect = 6e-14
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 5/176 (2%)
Frame = +1
Query: 139 RKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKG 318
RK E++ + E + F + L + F + IQ++ I +KG
Sbjct: 17 RKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKG 76
Query: 319 RDVIAQAQSGTGKTATFSISILQTLD----TTLRETQVLILSPTRELATQIQKVILALGD 486
RD++ A++G+GKT F + +++ L T+L L++SPTRELA Q + ++ +G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR 136
Query: 487 FMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRV-LRTRSIKMLVL 651
+ IGG N E+ +L +++ TPGR+ I + V T ++ML+L
Sbjct: 137 LHSFSAGLIIGGNNYKEEKERLS-RMNILVCTPGRLLQHIDQAVNFDTSGLQMLIL 191
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 58.4 bits (135), Expect = 8e-10
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Frame = +1
Query: 208 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 387
+F S+ + L + GF+K + +Q +I +K +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 388 TL---DTTLRETQVLILSPTRELATQI---QKVILA-----LGDFMNVQCHACIGGT-NL 531
+ DT LI++PTRELATQI K +LA L + IGG L
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 532 GEDIRKL-DYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
D+ + VV GTPGR+ +M+ + ++ +++L+L
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILIL 160
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.8 bits (126), Expect = 1e-08
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Frame = +1
Query: 262 GFEKPSAIQQRSILPIVKGRD-VIAQAQSGTGKTATFSISILQTL---DTTLRETQV--L 423
GFEK + +QQR + + + + QA++GTGKT F + + + L +++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 424 ILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ-HVVSGTPGRVFD 600
ILSPTRELA QI + L ++ IGG + + + G +++ TPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 601 MIRR-RVLRTRSIKMLVL 651
++ R+L + S +L
Sbjct: 177 HLQNPRILESLSTDSFIL 194
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.8 bits (121), Expect = 4e-08
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 14/204 (6%)
Frame = +1
Query: 82 KNLEAN*IRKMTSSEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTY 261
+NLE N I + +++ +SN I + + + V+ DT L D L +
Sbjct: 114 QNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQ-------------LADHLNNKM--- 157
Query: 262 GFEKPSAIQQRSILPIVK--GRDVIAQAQSGTGKTATFSISILQ-------TLDTTLRET 414
P+AIQ + ++ +D +AQ+G+GKT + + I+Q L T
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 415 QVLILSPTRELATQIQKVILALGD----FMNVQCHACIGGTNLGEDIRKLDYGQHVVSGT 582
+I++PTREL QI V L + V C+ IGG + ++ G +++ GT
Sbjct: 218 YAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGT 276
Query: 583 PGRVFDMIRR-RVLRTRSIKMLVL 651
PGR+ D + L ++ +VL
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVL 300
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 6e-05
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Frame = +1
Query: 277 SAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL-RETQVLILSPTRELAT 453
+ IQ+ +I I RD++A A +G+GKT + ILQ L + + +I++PTREL
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 454 QI--QKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIR 609
QI Q L+ G + + + E KL + GTP R+ I+
Sbjct: 130 QIYRQAEKLSFGTSLKI-IELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQ 182
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 217 SMGLRDELLRGIYTY-GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL 393
S L EL+ +YT EK Q +I + G VI + +GK+ + I ILQ+L
Sbjct: 292 SRPLSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
Query: 394 DTTLRETQVLILSPTRELATQIQKVILALGDFM 492
+ T + PT+ LA +K ++ + +M
Sbjct: 352 LEDNQSTAFFVF-PTKSLAQDQKKSLIDILSYM 383
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 191 MSKLYPLLTPWDFEMSYCEEYTHMVSKNLQQFSREASCL*SKAEM**LKHNLVQERLRHS 370
MS L L T + FE++ +++ +++K + F + ++ EM L HN+ Q R S
Sbjct: 1124 MSFLVTLQTTYSFELTLNYDFSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPRSS 1183
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 251 IPRNNSSRSPMESKVGITSTSSLVSNSTF 165
I +NN+ +SP++ +V ITS SS +TF
Sbjct: 41 IIQNNTRKSPLK-RVSITSESSFYKENTF 68
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 289 QRSILPIVKGRD--VIAQAQSGTGKTATFSISILQTLDTTLRE 411
Q + PI G D ++ A +G GKT + IL L LRE
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLRE 566
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 324 ISAFDYRQDASLLNC*RF--FETICVYSSQ*LISKSH 220
I AF Y D LNC + ++T+C+ ++ +I SH
Sbjct: 784 IKAFTYNVDTKQLNCIKSWKYKTVCLVFAEAVIFGSH 820
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 263 PYVYIPRNNSSRSPMESKVGITSTSS 186
PY IP NN SPM VG + +++
Sbjct: 303 PYKSIPLNNRPYSPMSEIVGFSGSTT 328
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +1
Query: 490 MNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIR 609
+++ H C+ N + ++ +Y + +G+PG+VFD++R
Sbjct: 458 VHLDVHWCMAVINKSK--KRFEYWDSL-AGSPGKVFDLLR 494
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 319 RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQK 465
R + +G+GKTA F I Q LIL +ELA Q K
Sbjct: 47 RRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQALK 95
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 154 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 282
+DLS E D++ +PT D + + L + KP A
Sbjct: 94 QDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFDDKPWRKPGA 136
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 12 KFPFGNLEIQILRDFHLSFNLLF 80
++PFG ++++L DF S L+F
Sbjct: 155 RYPFGMQQMELLVDFSFSILLIF 177
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 248 PRNNSSRSPMESKVGITSTSSLVSNSTFDKSSDNIFLL 135
PRN + S + + TSSL SNST K+S LL
Sbjct: 264 PRNTPTPSNNGTSINANVTSSLTSNST-GKTSKTTDLL 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,272
Number of Sequences: 5004
Number of extensions: 56756
Number of successful extensions: 252
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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