Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12f18
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      102   3e-24
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              29   0.052
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  102 bits (244), Expect = 3e-24
 Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 11/173 (6%)
 Frame = +1

Query: 166 NVEFDTSED--VEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQA 339
           N++ + S D   + I +F++ GLR+ +L  I   G++KP+ +Q+ ++  I+ GRD++A A
Sbjct: 181 NIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACA 240

Query: 340 QSGTGKTATFSISILQTL---------DTTLRETQVLILSPTRELATQIQKVILALGDFM 492
           Q+G+GKTA F++ I+ TL          +T  E QV+I+SPTREL  QI + I+      
Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300

Query: 493 NVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL 651
            ++     GGT++     KL  G H++  TPGR+ D + +  ++  S++ LVL
Sbjct: 301 ILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVL 353


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -2

Query: 369 ECRSLSCTRLCLSYYISAFDYRQDASLLNC*RFFETICVYSS--Q*LISKSHGVKSGYN 199
           E R L C   CL       D +++ SL     FF+ I  Y +  Q  IS+  G+  G N
Sbjct: 65  ETRQLKCYMYCLWEQFGLVDDKRELSLNGMLTFFQRIPAYRAEVQKAISECKGIAKGDN 123


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 506 MLVLEVPILEKI*GNWITDSMLC 574
           +LV+ + +L +I GNW   +++C
Sbjct: 92  LLVMPMALLYEISGNWSFGTIMC 114


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 337 AQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELAT 453
           A+ G G           TLDT LRE Q  +   ++  +T
Sbjct: 55  AEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTST 93


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 284 IAEGFSKPYVYIPRNNSSRSPMESKVGITSTSSLVSNSTFDKSSDNIFLLDDTSDD 117
           I E  S+     P +++++   + +VGI      V N+T     D +  L+   D+
Sbjct: 90  ITEDSSRKQTIDPLSSNTQITRKRRVGIVENQYAVENNTGSSLCDLVQGLERLFDE 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,926
Number of Sequences: 438
Number of extensions: 3912
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)