Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12f16
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 31 0.90
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 29 3.6
03_01_0298 + 2318836-2319051,2321238-2323106 29 3.6
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338... 29 4.8
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388... 28 6.3
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 8.4
04_04_0463 - 25397837-25399693,25402136-25402405 28 8.4
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +2
Query: 389 YTSKRDRFYESFKRY-HAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQ 565
Y S++ R Y Y YE +N +++++ K ++ T+ + + S K +
Sbjct: 2165 YKSRQCRTYFHLAHYTDGLFKSYEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSE 2224
Query: 566 KT-YELAEFDLKNLSSLESYETLKIKLALSKYMGYAQHPGND 688
KT Y + +L+ +L+ E KI+ +K+ Q D
Sbjct: 2225 KTDYSVKIQELQKQLALDEEEAGKIQCTHAKFSAKIQKSSKD 2266
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 533 TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMGYAQHPGNDPARCWK 706
TE+ S+++ K E+ E D+ + S + YET + K+ + P +PA W+
Sbjct: 84 TELQLSNDRQSKPDEVTEDDMPSTSGRQLYETEVPASSSKKHCSLSPLPAYEPAFDWE 141
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 248 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 346
A H F HF C SSN NYVC + + WK+L
Sbjct: 92 AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124
>04_03_0128 -
11530618-11530838,11532683-11532809,11533746-11533892,
11533981-11534082,11534207-11534332,11535507-11535584,
11535780-11535827,11536005-11536193
Length = 345
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 117 FKSRRDFNSDELS*SPL-IKRYAGTVFENTCLTKKTFSF 4
+KS +SD+LS S +K+ G + + TC TKK+ SF
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF 309
>04_04_0224 -
23738105-23738273,23738364-23738472,23738702-23738804,
23738895-23738926,23739342-23739592,23739639-23739754,
23740271-23740526,23740760-23740847,23740985-23741062,
23741238-23741313,23741532-23741590,23742639-23742711
Length = 469
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 116 LNREGISTQTNFRNHLLLKDMQ 51
+NREGIS N N LLLK +Q
Sbjct: 77 INREGISYYNNLINELLLKGVQ 98
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 560 IQKTYELAEFDLKNLSSLESYETLKIKLALSKYMGYAQHPGNDPARC 700
+ +TY +E +LSSL S+E+ ++ S Y HP NDP RC
Sbjct: 2044 VGRTYLWSE--THSLSSLLSHES-RVGFMKSSVC-YPSHPSNDPFRC 2086
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 248 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 346
A H+F HF C SSN NY C I + WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,235,274
Number of Sequences: 37544
Number of extensions: 253238
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -