Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12f07
(571 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 259 6e-69
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 259 6e-69
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 259 6e-69
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 259 6e-69
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 136 4e-32
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 110 3e-24
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 54 3e-07
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 54 3e-07
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 2.9
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 2.9
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.9
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.9
BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein ... 31 2.9
BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein ... 31 2.9
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 2.9
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 2.9
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 2.9
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 2.9
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.9
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 2.9
AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophil... 31 3.8
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 6.6
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 6.6
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 6.6
Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl transf... 29 8.7
X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferas... 29 8.7
U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferas... 29 8.7
CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein. 29 8.7
BC020790-1|AAH20790.1| 331|Homo sapiens Rab geranylgeranyltrans... 29 8.7
AL357314-5|CAI22393.1| 331|Homo sapiens Rab geranylgeranyltrans... 29 8.7
AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens ... 29 8.7
AB209023-1|BAD92260.1| 320|Homo sapiens Rab geranylgeranyltrans... 29 8.7
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 259 bits (634), Expect = 6e-69
Identities = 117/141 (82%), Positives = 136/141 (96%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 407
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 408 RCEPKKFGGPGARARYQKSYR 470
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 259 bits (634), Expect = 6e-69
Identities = 117/141 (82%), Positives = 136/141 (96%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 407
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 408 RCEPKKFGGPGARARYQKSYR 470
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 259 bits (634), Expect = 6e-69
Identities = 117/141 (82%), Positives = 136/141 (96%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 407
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 408 RCEPKKFGGPGARARYQKSYR 470
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 259 bits (634), Expect = 6e-69
Identities = 117/141 (82%), Positives = 136/141 (96%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 407
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 408 RCEPKKFGGPGARARYQKSYR 470
RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 136 bits (330), Expect = 4e-32
Identities = 60/83 (72%), Positives = 75/83 (90%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VDIRVTVKGGGHVAQVYAIRQAI 296
VDIRV VKGGGHVAQ+Y Q +
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQEL 88
Score = 30.7 bits (66), Expect = 3.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 313 PSTRNM*TKPQRRKSKTS*YNTIGVCW 393
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 110 bits (265), Expect = 3e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Frame = +3
Query: 51 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 230
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 231 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 374
DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 54.4 bits (125), Expect = 3e-07
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = +3
Query: 72 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 248
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 249 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 428
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 382
Query: 429 GGPGARARY 455
G GAR ++
Sbjct: 383 GQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 54.4 bits (125), Expect = 3e-07
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = +3
Query: 72 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 248
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 249 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 428
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 288
Query: 429 GGPGARARY 455
G GAR ++
Sbjct: 289 GQEGARRKF 297
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 159 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 335
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 159 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 335
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
>AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophila)
homolog-associated protein 3 protein.
Length = 979
Score = 30.7 bits (66), Expect = 3.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 227 GRHQSDSQGWWSCSTSLRYPTSYFKG 304
GRHQ+ S GWWS +L + + G
Sbjct: 251 GRHQAKSTGWWSSDDNLDSDSGFLAG 276
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 6.6
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 339 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 422
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 6.6
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 339 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 422
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 6.6
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 339 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 422
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 331
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 331
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferase
II protein.
Length = 331
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 331
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferase
type II beta-subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 331
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein.
Length = 331
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 331
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>BC020790-1|AAH20790.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 331
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AL357314-5|CAI22393.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 331
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens
cDNA FLJ44066 fis, clone TESTI4036909, weakly similar
to Regulator of nonsense transcripts 1. ).
Length = 926
Score = 29.5 bits (63), Expect = 8.7
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +3
Query: 126 LRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKA 305
L P + R+ + K P KF ++ + T+K + QV+ + + + A
Sbjct: 385 LLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATA 444
Query: 306 LIAFYQKYVDEASKKEIKDI 365
LI Q S +E+K++
Sbjct: 445 LIQIAQMMASHESIEEVKEL 464
>AB209023-1|BAD92260.1| 320|Homo sapiens Rab
geranylgeranyltransferase, beta subunit variant protein.
Length = 320
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 331
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,698,789
Number of Sequences: 237096
Number of extensions: 2155792
Number of successful extensions: 5283
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5279
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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