Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12f01
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.5  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.7  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   4.7  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   6.2  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.2  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   8.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.2  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 264 MTTASVPSTASCTESGSRTFPLTISTLSLRCSGS 163
           +TT S  +TASCT   S T   T +++S  C+G+
Sbjct: 762 VTTTSTTATASCTLPISYTSTPTTTSISGTCNGA 795


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 430 ERRPQENVPGSERQRLKLDRRVSATLHRRPKPRNDY*SEP*EDTGQDHCQVRP 588
           +R  QE +   ERQ+LKL+   +  + +R  P  ++ ++  ++  +   + RP
Sbjct: 158 QRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVADKTDELNEFEKEFRP 210


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 261 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAA--STAFKPI 88
           +T+SVP+    + S + + P+++++ S   SGS   S T   T     ++    T   PI
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPI 318

Query: 87  TPVEPKITT 61
           T   P +++
Sbjct: 319 TTSAPSLSS 327


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +3

Query: 141 RSYVTQQNSQNILKTRSR*SKEMFSNQTRYMRPSKEQTLSSSP*GLGTTWRRLR 302
           R YV+Q+N     K      +++++ + RY  P K++++S +P  +  ++R LR
Sbjct: 19  RGYVSQENKVKRRKRLFNAIRKLWNERRRYRMP-KDESISPTP--ISYSFRSLR 69


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 357 LTFFALIASIMFLVPSDKSEVGARSFLVPRVM 262
           L   A + ++M +VP+    +G RS   P+VM
Sbjct: 4   LKLVASVLALMTIVPAQAGLIGKRSVFKPKVM 35


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 241 DGLMYRVWFENISFDYLDLVFKMFW 167
           D L    WF ++S DY+D + +  W
Sbjct: 21  DSLKKPNWFTDVSIDYVDELIEHLW 45


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +3

Query: 132 KYERSYVTQQNSQNILKTRSR*SKEMFSNQTRYMRPSKEQTLSSSP*GLGTTWRRLRIY 308
           KY++S+ T      + K RSR     + +  RY RP    T  + P  L T +R LR+Y
Sbjct: 184 KYQQSWKTLF----LKKPRSR-FDGCYISVCRYFRPGTSDTSWNQPIHLITYYRYLRLY 237


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 25/95 (26%), Positives = 41/95 (43%)
 Frame = -3

Query: 321 LVPSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTN 142
           L  S  S   + S +VP    T+S  +T S   + S + PL+ ST++   + +F  S  N
Sbjct: 662 LPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVA--PTSTFTSSGFN 719

Query: 141 ARTSRPFLSAASTAFKPITPVEPKITTFFILSLTV 37
             +  P  S ++             +TF  LS T+
Sbjct: 720 TTSGLPTSSVSTPLSNSSAYPSSGSSTFSRLSSTL 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,713
Number of Sequences: 5004
Number of extensions: 58814
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)