Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12f01
         (716 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094929-1|AAM11282.1|  204|Drosophila melanogaster RH49505p pro...   178   5e-45
AE014297-1036|AAF54447.1|  204|Drosophila melanogaster CG9471-PA...   177   1e-44
AY118573-1|AAM49942.1|  898|Drosophila melanogaster LD43055p pro...    35   0.096
AE014297-1147|AAF54528.1|  892|Drosophila melanogaster CG6325-PA...    35   0.096
AY060800-1|AAL28348.1|  985|Drosophila melanogaster GH26463p pro...    33   0.51 
AE013599-3767|AAF47129.2|  985|Drosophila melanogaster CG3105-PA...    33   0.51 
U62004-1|AAC47282.1|  577|Drosophila melanogaster Sob protein pr...    30   2.7  
BT003205-1|AAO24960.1|  578|Drosophila melanogaster RE22261p pro...    30   2.7  
AE014134-634|AAF51087.1|  578|Drosophila melanogaster CG3242-PA ...    30   2.7  
AY071730-1|AAL49352.1|  702|Drosophila melanogaster RH44902p pro...    30   3.6  
AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-P...    30   3.6  
AE014134-1888|AAF52952.2|  702|Drosophila melanogaster CG5337-PA...    30   3.6  
AY119584-1|AAM50238.1|  534|Drosophila melanogaster LD14064p pro...    29   4.8  
AE014296-1373|AAS65055.1|  534|Drosophila melanogaster CG7942-PB...    29   4.8  
AE014296-1372|AAF50486.1|  534|Drosophila melanogaster CG7942-PA...    29   4.8  
AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9 signalo...    29   6.3  

>AY094929-1|AAM11282.1|  204|Drosophila melanogaster RH49505p
           protein.
          Length = 204

 Score =  178 bits (434), Expect = 5e-45
 Identities = 87/199 (43%), Positives = 122/199 (61%)
 Frame = +2

Query: 68  IFGSTGVIGLNAVEAALKKGLEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVHEAVEG 247
           I G TG+ G  AV+ AL+KGL V+   R    +PE  K KVE+VKG+V   + V   +EG
Sbjct: 6   IIGGTGMTGECAVDHALQKGLSVKLLYRSEKTVPERFKSKVELVKGDVTNYEDVQRVIEG 65

Query: 248 TDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFYEQEKVPPIFVN 427
            DAV + LGTRN L  T++LS GT+N+I AM+   +   S  +S+FL     +VP +F  
Sbjct: 66  VDAVAVILGTRNKLEATTELSRGTENLIKAMKEAKLTKFSIVMSSFLLRPLNEVPTVFHR 125

Query: 428 LNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTPGRTIAKCDLGTFLVD 607
           LNE+H+RM    K   L+WIA  PPH  D+P+      V  E+ PGR ++K DLG F++D
Sbjct: 126 LNEEHQRMLDLTKACDLDWIAILPPHIADEPA--TAYTVLHEEAPGRLVSKYDLGKFIID 183

Query: 608 ALSEPKYYKAVIGICNVPK 664
           +L +P++Y+ V GI   PK
Sbjct: 184 SLEQPEHYRKVCGIGKSPK 202


>AE014297-1036|AAF54447.1|  204|Drosophila melanogaster CG9471-PA
           protein.
          Length = 204

 Score =  177 bits (431), Expect = 1e-44
 Identities = 86/199 (43%), Positives = 122/199 (61%)
 Frame = +2

Query: 68  IFGSTGVIGLNAVEAALKKGLEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVHEAVEG 247
           I G TG+ G  AV+ AL+KGL V+   R    +PE  K KVE+VKG+V   + V   +EG
Sbjct: 6   IIGGTGMTGECAVDHALQKGLSVKLLYRSEKTVPERFKSKVELVKGDVTNYEDVQRVIEG 65

Query: 248 TDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFYEQEKVPPIFVN 427
            DAV + LGTRN L  T++LS GT+N+I AM+   +   S  +S+FL     +VP +F  
Sbjct: 66  VDAVAVILGTRNKLEATTELSRGTENLIKAMKEAKLTKFSIVMSSFLLRPLNEVPTVFHR 125

Query: 428 LNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTPGRTIAKCDLGTFLVD 607
           LNE+H+RM    K   L+WIA  PPH  D+P+      V  ++ PGR ++K DLG F++D
Sbjct: 126 LNEEHQRMLDLTKACDLDWIAILPPHIADEPA--TAYTVLHDEAPGRLVSKYDLGKFIID 183

Query: 608 ALSEPKYYKAVIGICNVPK 664
           +L +P++Y+ V GI   PK
Sbjct: 184 SLEQPEHYRKVCGIGKSPK 202


>AY118573-1|AAM49942.1|  898|Drosophila melanogaster LD43055p
           protein.
          Length = 898

 Score = 35.1 bits (77), Expect = 0.096
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -3

Query: 321 LVPSDKSEVGARSFLVPR-VMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRT 145
           ++PS +++  ++SFL+PR ++ +    S+A+ T SGS    L   ++  R    F+   T
Sbjct: 288 ILPSLQAQPQSQSFLLPRSILASEEDRSSAAFTGSGSEAESLNEQSVVARIIADFSDIET 347

Query: 144 NARTSRP 124
             R+S+P
Sbjct: 348 EQRSSQP 354


>AE014297-1147|AAF54528.1|  892|Drosophila melanogaster CG6325-PA
           protein.
          Length = 892

 Score = 35.1 bits (77), Expect = 0.096
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -3

Query: 321 LVPSDKSEVGARSFLVPR-VMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRT 145
           ++PS +++  ++SFL+PR ++ +    S+A+ T SGS    L   ++  R    F+   T
Sbjct: 288 ILPSLQAQPQSQSFLLPRSILASEEDRSSAAFTGSGSEAESLNEQSVVARIIADFSDIET 347

Query: 144 NARTSRP 124
             R+S+P
Sbjct: 348 EQRSSQP 354


>AY060800-1|AAL28348.1|  985|Drosophila melanogaster GH26463p
           protein.
          Length = 985

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 31/99 (31%), Positives = 46/99 (46%)
 Frame = -3

Query: 435 SFKLTKIGGTFSCS*NKNADKQADTVLTFFALIASIMFLVPSDKSEVGARSFLVPRVMTT 256
           S  L    G F C   +  D   D +LT   + AS  F  P+D+ EVG++S +    +  
Sbjct: 390 SCNLENSSGLF-CDLRQPDDCTIDDILT--PVNASNSF--PADEFEVGSQSQVNESSLDK 444

Query: 255 ASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNA 139
           A   ST +C  SGS      +S++    +GSF G   +A
Sbjct: 445 AKSASTETCDASGSNPATRLLSSI----NGSFVGEAIHA 479


>AE013599-3767|AAF47129.2|  985|Drosophila melanogaster CG3105-PA
           protein.
          Length = 985

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 31/99 (31%), Positives = 46/99 (46%)
 Frame = -3

Query: 435 SFKLTKIGGTFSCS*NKNADKQADTVLTFFALIASIMFLVPSDKSEVGARSFLVPRVMTT 256
           S  L    G F C   +  D   D +LT   + AS  F  P+D+ EVG++S +    +  
Sbjct: 390 SCNLENSSGLF-CDLRQPDDCTIDDILT--PVNASNSF--PADEFEVGSQSQVNESSLDK 444

Query: 255 ASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNA 139
           A   ST +C  SGS      +S++    +GSF G   +A
Sbjct: 445 AKSASTETCDASGSNPATRLLSSI----NGSFVGEAIHA 479


>U62004-1|AAC47282.1|  577|Drosophila melanogaster Sob protein
           protein.
          Length = 577

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 276 VPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS 115
           +P ++  A++   +SC+ S S   PLT +T S   + S + + +N+ TS P  S
Sbjct: 208 LPSLIDIANIELKSSCSSSSSGEPPLTAATASAAATSSPSSNNSNS-TSTPTTS 260


>BT003205-1|AAO24960.1|  578|Drosophila melanogaster RE22261p
           protein.
          Length = 578

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 276 VPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS 115
           +P ++  A++   +SC+ S S   PLT +T S   + S + + +N+ TS P  S
Sbjct: 209 LPSLIDIANIELKSSCSSSSSGEPPLTAATASAAATSSPSSNNSNS-TSTPTTS 261


>AE014134-634|AAF51087.1|  578|Drosophila melanogaster CG3242-PA
           protein.
          Length = 578

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 276 VPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS 115
           +P ++  A++   +SC+ S S   PLT +T S   + S + + +N+ TS P  S
Sbjct: 209 LPSLIDIANIELKSSCSSSSSGEPPLTAATASAAATSSPSSNNSNS-TSTPTTS 261


>AY071730-1|AAL49352.1|  702|Drosophila melanogaster RH44902p
           protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 199 DYLDLVFKMFWEFCWVTYERSYF*AFFKCRLNSVQADH-ASRTKNHDLLHFKFNCLLIFL 23
           ++ + V    WE CW  Y   YF  F    + +V AD   ++    D +   F+ L +++
Sbjct: 581 EFTEAVVIRMWEACWSNYLTDYFHLFLCLAIIAVYADDVVAQNLRPDEMLLHFSSLAMYM 640

Query: 22  N 20
           +
Sbjct: 641 D 641


>AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-PA
           protein.
          Length = 2059

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 541 FNNHFSAWVVCEVWRKRGDPI*AAVFQSLEHSLVVFVQIDEDRRHLFLFIK 389
           ++N+ +A  V E  +K G+ +    F  L H LV F  I+     L++FIK
Sbjct: 556 YSNYMNAIAVREQSKKAGNSLRKFKFDLLNHLLVHFPTIESILYSLYMFIK 606


>AE014134-1888|AAF52952.2|  702|Drosophila melanogaster CG5337-PA
           protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 199 DYLDLVFKMFWEFCWVTYERSYF*AFFKCRLNSVQADH-ASRTKNHDLLHFKFNCLLIFL 23
           ++ + V    WE CW  Y   YF  F    + +V AD   ++    D +   F+ L +++
Sbjct: 581 EFTEAVVIRMWEACWSNYLTDYFHLFLCLAIIAVYADDVVAQNLRPDEMLLHFSSLAMYM 640

Query: 22  N 20
           +
Sbjct: 641 D 641


>AY119584-1|AAM50238.1|  534|Drosophila melanogaster LD14064p
           protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 215 EPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFY 394
           E + +++ +EG + V    GT+ DL       + T+N+ D       K      S + +Y
Sbjct: 12  ELERIYDTIEGIEKVG---GTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDMCSFYKYY 68

Query: 395 EQEKVPP---IFVNLNEDHKRMFQALKDSGLNWIA 490
             E V P   IF+  N +     Q L   G  W+A
Sbjct: 69  SGELVAPVLTIFIGGNHEASNYLQELPYGG--WVA 101


>AE014296-1373|AAS65055.1|  534|Drosophila melanogaster CG7942-PB,
           isoform B protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 215 EPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFY 394
           E + +++ +EG + V    GT+ DL       + T+N+ D       K      S + +Y
Sbjct: 12  ELERIYDTIEGIEKVG---GTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDMCSFYKYY 68

Query: 395 EQEKVPP---IFVNLNEDHKRMFQALKDSGLNWIA 490
             E V P   IF+  N +     Q L   G  W+A
Sbjct: 69  SGELVAPVLTIFIGGNHEASNYLQELPYGG--WVA 101


>AE014296-1372|AAF50486.1|  534|Drosophila melanogaster CG7942-PA,
           isoform A protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 215 EPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFY 394
           E + +++ +EG + V    GT+ DL       + T+N+ D       K      S + +Y
Sbjct: 12  ELERIYDTIEGIEKVG---GTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDMCSFYKYY 68

Query: 395 EQEKVPP---IFVNLNEDHKRMFQALKDSGLNWIA 490
             E V P   IF+  N +     Q L   G  W+A
Sbjct: 69  SGELVAPVLTIFIGGNHEASNYLQELPYGG--WVA 101


>AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9
           signalosome subunit 1 CSN1 protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 207 FPLTISTLSLRCSGSFAGSRTNARTSRPFLSAASTAFKPITPVEPKI 67
           FP  IST ++   G F    T  R     L  AST+FK    +EP++
Sbjct: 309 FPEMISTSNVAVYGGFCALATFDRQELKRLVIASTSFKLFLELEPQL 355


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,929,356
Number of Sequences: 53049
Number of extensions: 673946
Number of successful extensions: 2426
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2424
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)