Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12f01
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    33   0.20 
L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z73425-1|CAA97784.1|   97|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 276 VPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS--AAST 103
           VP   T+ +VPST   T S SRT   + +T S   +   A   T  R   P L   +A T
Sbjct: 582 VPSTTTSVTVPSTQKATPSPSRTTKKSTTTTSTTATPRQA---TPTRNPLPLLQTMSAIT 638

Query: 102 AFKPITPVEPKIT 64
           AF  +  +E  +T
Sbjct: 639 AFPTLLSMEKAVT 651


>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
 Frame = +2

Query: 68  IFGSTGVIGLNAVEAALKKGLE-VRAFVRDPAKLPEH--LKDKVEIV--KGNVLEPDSVH 232
           +FG++G +GL  V    K G + +  + +DP  + EH  L +  +++     +++ +S+ 
Sbjct: 64  VFGASGFLGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIR 123

Query: 233 EAVEGTDAVVITLGTR 280
           +AV+ ++ V+  +GTR
Sbjct: 124 KAVKYSNVVINLIGTR 139


>L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical
           protein ZC21.9 protein.
          Length = 262

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 600 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 490
           R+   +HLA V+PGVF+   ++ I++L SS   C  N+
Sbjct: 13  RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 261 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAASTAFKPIT 85
           +T ++P T   T   S +  L  ++ +   S +   +RT +R+ +P  S AST  +P+T
Sbjct: 80  STTNIPMTTFSTNEASSSTKLLSTSSTAEISST---TRTVSRSIKPETSTASTTIRPLT 135


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 273 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 175
           P+  TT ++PST + TES S +   + +T  +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164


>Z73425-1|CAA97784.1|   97|Caenorhabditis elegans Hypothetical
           protein F12F6.2 protein.
          Length = 97

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 258 TASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS 115
           T S+PS  SCT +  R   + +    + C  SF+ +   ++  RPFLS
Sbjct: 45  TLSIPSV-SCTAAIDRKKEMMMKETMVVCVRSFSDALETSQRLRPFLS 91


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 273 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 175
           P+  TT ++PST + TES S +   + +T  +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,627
Number of Sequences: 27780
Number of extensions: 344164
Number of successful extensions: 1068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)