Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12f01
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 591 PRSHLAMVLPGVFSGFTSIIIS 526
           PRS  A VL  V++GF  II++
Sbjct: 631 PRSFSARVLGMVWAGFAMIIVA 652


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 128 LEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVH 232
           L    +   P +LP+HL   +   K  V+E   +H
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLH 401


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 193 LDLVFKMFWEFCWVTYERSYF 131
           +++V KM W +  + YE S +
Sbjct: 272 VEIVMKMKWSYVSIIYEESNY 292


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = -2

Query: 226 RVWF-----ENISFDYLDLVFKMFWEF 161
           R WF      +I  DY+ L+F  F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = -2

Query: 226 RVWF-----ENISFDYLDLVFKMFWEF 161
           R WF      +I  DY+ L+F  F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = -2

Query: 226 RVWF-----ENISFDYLDLVFKMFWEF 161
           R WF      +I  DY+ L+F  F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 500 AETRRSNLSRCLSEPGTFSCGLRSN 426
           AE   S  +     P TF+C +R N
Sbjct: 310 AEIEPSTQTIDFGRPATFTCNVRGN 334


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 284 DLAPTSDLSEGTKNIIDAMRAKNVKT 361
           D+ P     EG+K I +    KNV T
Sbjct: 159 DVIPIRRTGEGSKPIFEREEIKNVLT 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,766
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)