Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e24
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    37   0.013
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    33   0.16 
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    29   2.7  
01_06_1034 + 33962813-33963802                                         29   3.5  
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512     29   4.7  
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995...    28   8.2  
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116...    28   8.2  

>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +1

Query: 409 LNSLGALFATKQGLLKIL-MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTN 585
           + SL   FA +Q   + L + LN  N S  ++ +  E   D L++ ++++ + V  +N  
Sbjct: 132 MKSLQEAFAVQQARSESLSLALNGQNSSEDVI-VALENHNDYLKEVVDNLRQAVSIINRK 190

Query: 586 SEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 696
            EK++   E FKN+      + +    EL+  +  L+
Sbjct: 191 HEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELE 227


>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 271 AKFYNVIDFCKGLE-IAHDDILDCNWD 348
           A+FYNV   C  +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 565 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 476
           H+LK++  C+ +H  R QFE      FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269


>01_06_1034 + 33962813-33963802
          Length = 329

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 400 WISACEK*FRLNGKLDRCPNCN 335
           W  AC +  R++G+   CPNCN
Sbjct: 8   WCYACRRPIRVSGQDITCPNCN 29


>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
          Length = 957

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 468
           +D D +  LNE++  ++K K+DL     L+  K  L ++  R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701


>03_02_0628 +
           9957385-9957888,9957985-9958111,9958541-9958608,
           9958695-9958772,9958885-9958949,9959130-9959196,
           9959344-9959526,9959690-9959746,9959857-9959952,
           9960061-9960219
          Length = 467

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 382 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNK--SNALLHLQTEGE--RDDLRDKIE 549
           +HK  ++RD   L +  A K+ L  +       NK        + TEG+  R +L DK  
Sbjct: 196 YHKVVAERDAGKLLSSIAVKEKLESLCREFQRQNKMLKEECRRVSTEGQNMRMELSDKFN 255

Query: 550 SVLKHV 567
           + +K V
Sbjct: 256 NAIKDV 261


>03_01_0146 -
           1161005-1161133,1161239-1161283,1161369-1161469,
           1161585-1161691,1161823-1161924,1162028-1162250,
           1162343-1162382
          Length = 248

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +1

Query: 472 NFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 651
           N DN+    L      E+DD  DK+E  +   K +     + +  H    +D+  + E+ 
Sbjct: 142 NMDNREIIELQRNVIKEQDDELDKLEETIVSTKHIALAINEELDLHTRLIDDLDEKTEET 201

Query: 652 ELRLNELDAKL 684
             +L     KL
Sbjct: 202 SNQLQRAQKKL 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,305
Number of Sequences: 37544
Number of extensions: 275049
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)