Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e22
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   219   2e-58
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   219   2e-58
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   2e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    30   0.29 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    28   1.2  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   2.0  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    26   3.5  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   3.5  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.7  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.7  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   6.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   8.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   8.2  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.2  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  219 bits (536), Expect = 2e-58
 Identities = 96/128 (75%), Positives = 117/128 (91%)
 Frame = +2

Query: 35  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 214
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 215 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 394
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122

Query: 395 ECADLWPR 418
           ECADLWPR
Sbjct: 123 ECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  219 bits (536), Expect = 2e-58
 Identities = 96/128 (75%), Positives = 117/128 (91%)
 Frame = +2

Query: 35  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 214
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 215 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 394
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122

Query: 395 ECADLWPR 418
           ECADLWPR
Sbjct: 123 ECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = +2

Query: 188 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 340
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 341 VNNKGEMKGSAITGPVAKE 397
           VN + E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = -3

Query: 339  MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 160
            +  ALSS+Y    S L        +T  +T   SS     T +++ +P P    + R P 
Sbjct: 777  LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 159  IPWTAITYRFFAPVLSAQLITAPTGRP 79
             P +A      A  +++ LI +P   P
Sbjct: 837  TPLSA-ALGSAAQSITSPLIMSPAAIP 862


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = -3

Query: 417  RGHKSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTP--SRLLNGFRCLMTTAGITFF 244
            +  K    LAT     E   +    T   ++SSKY+ +P  S+ +N    L +   + FF
Sbjct: 766  KSQKQKTELATFTTYKEDDTTTTTRTSIDSISSKYLESPVDSQKVNRTPNLQS---VPFF 822

Query: 243  RSSGLP--FLTVATIMSPEPAAGSLFRRPLIPWTAI 142
            R    P  F+     ++PE   GS  +  ++ W A+
Sbjct: 823  RQPDAPKRFVGTPDYLAPETLRGST-QDDMVDWWAL 857


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 417 RGHKSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 280
           R HK AH+       AEP ++P++   + P+++    +TPS L   F
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 17  YNKMSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 196
           YNK+ K+    +      ++ G    AVI      G KN+  ++V   +  L R      
Sbjct: 96  YNKLPKKSTDTAVILDPVMATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPG 155

Query: 197 GDMIVATVKK 226
            + ++  V K
Sbjct: 156 VEFVIGAVDK 165


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 221 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 331
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -2

Query: 340 YDTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSV 173
           Y+TR + K     +  +E  PLP       LF E  F    C    + + G  QS+
Sbjct: 11  YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 369 EPFISPLLLTMTPALSSKYINTPS 298
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 411  HKSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 259
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 337
           IV    KGK  L   + P++ I       R  G  +Y ED  GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 162 LIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPR 40
           L+P  A  Y    P  +A   T+PT  P  I++  PAEPP+
Sbjct: 175 LLPPNAPYYHEIEPPRTASN-TSPT--PNSIKSAHPAEPPK 212


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 328 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 233
           +V +++++     E FPLP       LFP  R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 127 CPCVVGAVDYCSHWETQGDTEFR 59
           CPC +    + SHW+ + D  FR
Sbjct: 14  CPCFLSCCAFMSHWKLK-DFSFR 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,255
Number of Sequences: 5004
Number of extensions: 53788
Number of successful extensions: 167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)