Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e22
         (587 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.4  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    24   4.2  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   7.3  
AJ459962-1|CAD31061.1|  685|Anopheles gambiae prophenoloxidase 9...    23   9.7  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 126 APVLSAQLITAPTGRPRE--IRNFAPAEP 46
           APV+ + ++TAP  RP +     FAP EP
Sbjct: 91  APVVPSSVVTAPPARPSQPPTTRFAP-EP 118


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1022

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 229  TLFDCGHNHVPRTGRRQSVQATFDTLDSDHIQILC 125
            T+F CG   + R    Q +QA FD    + I I+C
Sbjct: 932  TIFICGMYLLTRLRLEQDLQADFDV--ENAINIMC 964


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 33  REDVVVPRERNSVSPWVSQWE 95
           RED+     +N++  W  +W+
Sbjct: 922 REDIRATERQNTIDCWQEEWD 942


>AJ459962-1|CAD31061.1|  685|Anopheles gambiae prophenoloxidase 9
           protein.
          Length = 685

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 552 IYIVNV-YYANYHFSGLILM 496
           I  VNV YY NYH  G +L+
Sbjct: 353 ILSVNVPYYGNYHSLGHVLI 372


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,395
Number of Sequences: 2352
Number of extensions: 14464
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)