Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e22
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    28   0.078
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.14 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.73 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.73 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.73 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 0.078
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -2

Query: 268 DHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSVQATFDTLDSDHIQILCPCVVGAV 104
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 525


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -2

Query: 268 DHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSVQATFDTLDSDHIQILCPCVVGAV 104
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 615


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 424 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKMIICVIDIYN 546
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 424 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKMIICVIDIYN 546
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 424 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKMIICVIDIYN 546
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 450 YTFKISSCVLLSFPSTSKSNPKNDNLRNRHLQCKCAKLE 566
           YT  +++ ++L  P T  +   +  LRN      CA ++
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVK 692


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 246  FRSSGLPFLTVATIMSPEPAAGSLFRRPLIP 154
            F  S +PF++   I++  P +     RP+IP
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKGTRPMIP 1064



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 526  KLSFFGFDFDVLGKESKTQLLILNVY 449
            KLS FGF  + +   +   LLI NV+
Sbjct: 1412 KLSDFGFSTEDILDTADEDLLINNVF 1437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,510
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)