Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e21
         (292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   101   7e-23
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.14 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   0.14 
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    30   0.24 
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    29   0.42 
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   0.97 
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    27   1.7  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   1.7  
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    27   3.0  
Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical pr...    25   9.1  
AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical...    25   9.1  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    25   9.1  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score =  101 bits (243), Expect = 7e-23
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +1

Query: 79  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 246
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 139 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 240
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 139 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 240
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 126 RIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 227
           RIP  P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 138 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 239
           M I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 138 MPILLQQAWLNPQVRFEHMQTVLQRV 215
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 163 HACWSRIGMTGILVRICEGENTKYLRG-PF*EIKL-FLANEQQIRYTFKMAN 14
           H  W    + G+L+ I EGE   YL G P  E +  FL+N Q     F  A+
Sbjct: 453 HENWQPGDVIGVLLNIPEGEVVFYLNGTPLKEPETEFLSNRQPSEGVFAAAS 504


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 84  AHFKKLNCFSLTSNKLDTPSRWRT 13
           A F +LNC ++T+N+   P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 73  LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 180
           LK   A  W+ +P+R G  +R  C SC     ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518


>Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical
           protein F21D9.4 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 2   LFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDP 133
           +F Q+ HL G +N        + F   A   +  + + DT+K+P
Sbjct: 11  VFDQLIHLAGATNGWAHQPYDYRFYSQAYDGYWFVAMVDTEKEP 54


>Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical
           protein K09B11.10 protein.
          Length = 739

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = -1

Query: 289 FFYLKVKFIIPTPFSPAS*ILCHEHTL*STVCICSNRTCGLSHACWSRIGMTGILVRIC 113
           F +L V    P P+S          TL S V  CS RT  LS   W +   TG    IC
Sbjct: 306 FLFLAVDSFSPRPYS----------TLTSQVIPCSQRTTSLSLKYWMK---TGTQAEIC 351


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 172 RKYGLNICRQCFREYAHDIGFK 237
           R YGL +C  C R +  + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255


>Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical
           protein F35B12.8 protein.
          Length = 234

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 70  IKLFLANEQQIRYTFKMANLNEK 2
           + +FL  E ++ Y+F + NLNE+
Sbjct: 63  LTIFLEQEVEMAYSFGLENLNEQ 85


>AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical
           protein Y41C4A.9 protein.
          Length = 577

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 36  LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRIPVMPILLQQAWLNPQVRFEHMQT 200
           L+C  L    +++ + G   +L+ S +   T +    I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 193 CRQCFREYAHDIGFKK 240
           C  CF+EYAH  G  +
Sbjct: 330 CAICFKEYAHQAGLSE 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,789,029
Number of Sequences: 27780
Number of extensions: 136388
Number of successful extensions: 354
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)