Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12e17
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 38 0.006
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 33 0.17
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849... 30 1.6
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 30 1.6
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 2.8
01_06_1034 + 33962813-33963802 29 3.7
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 4.9
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995... 28 8.6
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116... 28 8.6
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +1
Query: 409 LNSLGALFATKQGLLKIL-MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTN 585
+ SL FA +Q + L + LN N S ++ + E D L++ ++++ + V +N
Sbjct: 132 MKSLQEAFAVQQARSESLSLALNGQNSSEDVI-VALENHNDYLKEVVDNLRQAVSIINRK 190
Query: 586 SEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 708
EK++ E FKN+ + + EL+ + L+ + +
Sbjct: 191 HEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRR 231
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 271 AKFYNVIDFCKGLE-IAHDDILDCNWD 348
A+FYNV C +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>08_01_0870 -
8491020-8491109,8491523-8491660,8492442-8492568,
8492667-8492801,8493262-8493731
Length = 319
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +1
Query: 493 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNEL 672
+L + E +RD + + +++L + +K T + E FKNDV +Q E ++ +
Sbjct: 166 SLRRAEVEEKRDKVHKESKALLDYTRKAITKLTELKKMLEKFKNDVEK--QQAE-QMTDW 222
Query: 673 DAKLNMLQSAEK 708
KL M+ S E+
Sbjct: 223 QTKLVMMDSKER 234
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 717 VFNFFGRLQHVKFGVEFVQTQFKLLKPVAHIVLER 613
V +FFG L H+K +E FKLL ++ LER
Sbjct: 24 VISFFGSLSHLKNDLECYLISFKLLPKYRNLHLER 58
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 565 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 476
H+LK++ C+ +H R QFE FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 400 WISACEK*FRLNGKLDRCPNCN 335
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 468
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>03_02_0628 +
9957385-9957888,9957985-9958111,9958541-9958608,
9958695-9958772,9958885-9958949,9959130-9959196,
9959344-9959526,9959690-9959746,9959857-9959952,
9960061-9960219
Length = 467
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 382 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNK--SNALLHLQTEGE--RDDLRDKIE 549
+HK ++RD L + A K+ L + NK + TEG+ R +L DK
Sbjct: 196 YHKVVAERDAGKLLSSIAVKEKLESLCREFQRQNKMLKEECRRVSTEGQNMRMELSDKFN 255
Query: 550 SVLKHV 567
+ +K V
Sbjct: 256 NAIKDV 261
>03_01_0146 -
1161005-1161133,1161239-1161283,1161369-1161469,
1161585-1161691,1161823-1161924,1162028-1162250,
1162343-1162382
Length = 248
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +1
Query: 472 NFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 651
N DN+ L E+DD DK+E + K + + + H +D+ + E+
Sbjct: 142 NMDNREIIELQRNVIKEQDDELDKLEETIVSTKHIALAINEELDLHTRLIDDLDEKTEET 201
Query: 652 ELRLNELDAKL 684
+L KL
Sbjct: 202 SNQLQRAQKKL 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,670
Number of Sequences: 37544
Number of extensions: 291956
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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