Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12e17
(722 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.72
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.72
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.72
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 25 0.96
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 25 0.96
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 25 0.96
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 25 0.96
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 23 2.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 3.9
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 22 5.1
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 22 6.7
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 6.7
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.0 bits (52), Expect = 0.72
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 420 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 256
++V ++ L+ + F +V I P ++ ++ + FA I + CV VVV
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.0 bits (52), Expect = 0.72
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 420 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 256
++V ++ L+ + F +V I P ++ ++ + FA I + CV VVV
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.0 bits (52), Expect = 0.72
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = -2
Query: 316 QFQDLCKNLLHCRILRSCRCARICT*NCAC 227
+++ C L HC +C C C C C
Sbjct: 738 RYEAHCFALCHCCDFDACDCEMTCPAGCKC 767
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.96
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
+ +++KY Y +N+ N K Y I++ + + I
Sbjct: 91 HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.96
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
+ +++KY Y +N+ N K Y I++ + + I
Sbjct: 91 HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.96
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
+ +++KY Y +N+ N K Y I++ + + I
Sbjct: 91 HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.96
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
+ +++KY Y +N+ N K Y I++ + + I
Sbjct: 91 HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 23.4 bits (48), Expect = 2.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 355 QVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHL 507
Q YH+ + F KQK ++ L + L LM F NKS ++ +
Sbjct: 9 QHYHITPV-FTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEI 58
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 3.9
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 420 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 256
++V ++ LL F ++ I P ++ ++ F F I CV VVV
Sbjct: 270 EKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVV 324
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 22.2 bits (45), Expect = 5.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 535 RDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 669
RD+I + +NT E+ +T + + +GN E L N+
Sbjct: 314 RDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQ 358
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +1
Query: 145 FDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTN 270
FD D Y+ N Q H K D+ N H+ + + N
Sbjct: 417 FDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNN 458
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.8 bits (44), Expect = 6.7
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 411 EIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 256
+I F L + VNLI ++I Y+ V F A + C+ +++
Sbjct: 224 DIFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFYLPADSGEKIALCINILL 275
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,814
Number of Sequences: 438
Number of extensions: 3300
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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