Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e16
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    28   1.6  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   2.8  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   2.8  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   2.8  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   4.9  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    26   4.9  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    26   6.4  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   6.4  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   6.4  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   8.5  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +1

Query: 22  TMNFWATFSICLVGYLVYAGHLNNELQEIKSIL-VVMYESMEKHFSNVVDEIDSL----K 186
           TM FWA FS+ ++   +  G     L+EI+S+L  V    +    + +  ++DSL    K
Sbjct: 345 TMAFWAIFSLPMIQKALPKG----VLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCK 400

Query: 187 TDTFMMLSNLQNNT 228
           TDT    S+   NT
Sbjct: 401 TDTGCCSSSCCKNT 414


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 371 YINLVISSVY*TLSRLLTTPFFVNST 294
           YIN V   +  TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 188 VLRESISS-TTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQ 51
           + ++S+SS TTL K  S  SY+ T+ + +  +S FK    T  P  +
Sbjct: 544 IQQKSVSSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNE 590


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -2

Query: 252 YNCVPRSNRVILQVAQHHKRVRFKRINFVYHIGKMFF----HRFVHDH 121
           Y  V R+ R++  V  H         N +YH GK++F        HDH
Sbjct: 269 YQLVARNMRILFHVC-HLVHADLSEYNLLYHKGKVYFIDVSQSVEHDH 315


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 457 RHGLH-LSKFKNAFASVSTTFVHHPI 531
           R GL   SKF  AFAS+S+ F+H+ +
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLHYQL 64


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 175 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKI 270
           D  K+ T +M+S   +NT+R WD  VK GK++
Sbjct: 59  DINKSST-LMVSGAADNTMRLWD--VKTGKQL 87


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +1

Query: 130 YESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 249
           Y +  +++ +++D  +S   D     S+  NN++ TW+ +
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVI 329


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 261 AIFYNCVPRSNRVILQVAQHHKRVRFKRI 175
           A+  + VPR  RVI QV+Q   R R K+I
Sbjct: 4   AVEKDAVPRKRRVISQVSQACIRCRQKKI 32


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 625 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 518
           Q+ +G  + +H ++DR++     ++ H +    DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = +1

Query: 76  AGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVK 255
           +G + + +Q +      +YE+ ++   N   ++  L+      ++++QN      D  V 
Sbjct: 143 SGGIESSIQNLDPYAQSLYETAKQLLQNADTDLSKLEKTCVQYMNSVQNFPT---DIPVP 199

Query: 256 NGKKISNLD 282
           +   ISNLD
Sbjct: 200 SNLSISNLD 208


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 91  NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNN-TIRTW 240
           N L E K  L+    +  K   NVV  I ++  D+  +  +  NN  IR W
Sbjct: 81  NSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKW 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,336
Number of Sequences: 5004
Number of extensions: 60241
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)