Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e15
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       375   e-104
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             33   0.16 
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   3.4  
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   3.4  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   3.4  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           29   3.4  
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)                  28   5.9  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   28   5.9  
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)                 28   7.9  
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  375 bits (922), Expect = e-104
 Identities = 180/208 (86%), Positives = 191/208 (91%)
 Frame = +3

Query: 42  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 221
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 222 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 401
           RIRELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124

Query: 402 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 581
           FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184

Query: 582 KVKIMLPWDQQGKNGPKKPQPDHILVTE 665
           KVKIMLPWD  GK GPKKP PD + + E
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVE 212


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +2

Query: 596 VAVGPARQERPEEATTRPHPG 658
           VA GPAR   PE   TRPHPG
Sbjct: 107 VAAGPARITSPEPPATRPHPG 127


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +3

Query: 96  EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 257
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 258 FNIPEQSVELYA 293
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 79  SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH-RVCSERKDAESVSSLP*Y 249
           +R+  ++ +L + P T     +CG + +AR  L+  P H R        + V SLP Y
Sbjct: 272 TRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVISLPSY 329


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 126  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 305
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 306  TRGLCAIAQA 335
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 446 WQAAWSTCQINEVCRWTHDPLW 511
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 440 CIWQAAWSTCQINEVCRWTHDPLWRP 517
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 305 YSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 427
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 569 STRNQGQNHVAVGPARQERPEEATTRP 649
           +++N  + H  + PA+QE+PE  + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188


>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
          Length = 301

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 608 PARQERPEEATTRPHPG 658
           PAR   PE   TRPHPG
Sbjct: 42  PARVTSPEPPATRPHPG 58


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 242 RSTEAIQHSRAICRIVC*KGGYSWPLRYRPGRISKIQAYR 361
           RS   +Q + + C  V    GY  PLR +P R S + A+R
Sbjct: 464 RSRNPVQRNESYCNAVSRSPGYYSPLRDKPARSSPL-AFR 502


>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
          Length = 1115

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 608 PARQERPEEATTRPHPG 658
           PAR   PE   TRPHPG
Sbjct: 537 PARITSPEPPATRPHPG 553


>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 429 CEVVVSGKLRGQRAKSMKFVDGLMIHSG--DPCNDYVNTATRHVLLRQGVLGIKVKIMLP 602
           CE + + KL+   +K+   + G   +    D C+ ++N      +  Q  LGIK+   L 
Sbjct: 136 CEWLTANKLQFHPSKTKSMIIGSSYNLAKIDQCSVFINNTEVTRVKSQKCLGIKIDDKLN 195

Query: 603 WDQQGKNGPKKPQP 644
           W        KK  P
Sbjct: 196 WGNHIDKFCKKAGP 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,433,207
Number of Sequences: 59808
Number of extensions: 484001
Number of successful extensions: 1484
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)