Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e13
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    24   1.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   1.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.5  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 239 EFPNTCQRDAYGVLLTKK 292
           +F  TC RD Y +L T K
Sbjct: 419 DFKGTCGRDKYDILRTAK 436


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 700 SGDNVXSHQGL*WRVCTLCSIFRMLFLIQ 614
           +GD V  HQ L  ++C L   F   F +Q
Sbjct: 205 NGDIVKEHQNLHNKICNLIDEFNECFGLQ 233


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 623 EQHAENTTECAHSPSQTLVTXDIITTL 703
           E H E T E A  P +++   D+I  +
Sbjct: 3   ENHLEQTLENAGMPDESINISDVIEVI 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,522
Number of Sequences: 336
Number of extensions: 3789
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)