Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e13
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    88   6e-18
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    87   1e-17
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    87   2e-17
03_05_0830 + 28034179-28035492                                         29   3.9  
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171...    29   5.1  
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327...    28   6.7  

>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 36/47 (76%), Positives = 41/47 (87%)
 Frame = +1

Query: 544 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDS 684
           RKSEIEYYA+L K  VHH+ GNN++LGTACGKYYRVC L+I DPGDS
Sbjct: 97  RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDS 143



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 35/55 (63%), Positives = 42/55 (76%)
 Frame = +2

Query: 56  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
           V A  QKK+ ++IN++L LVMKSGKY LGYK  LKTLR  K KL+I+A N PPLR
Sbjct: 43  VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLR 97


>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 36/47 (76%), Positives = 42/47 (89%)
 Frame = +1

Query: 544 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDS 684
           RKSEIEYYA+LAK  VHH+ GNN++LGTACGKY+RVC L+I DPGDS
Sbjct: 56  RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDS 102



 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = +2

Query: 53  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
           MVAAKK KK+ ++IN++L LVMKSGKY LGYK  L+TLR  KAKLVII+ N PPLR
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 34/47 (72%), Positives = 42/47 (89%)
 Frame = +1

Query: 544 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDS 684
           RKSEIEYYA+L K  V+H++GNN++LGTACGKYYRVC L++ DPGDS
Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDS 220



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/49 (69%), Positives = 37/49 (75%)
 Frame = +2

Query: 74  KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 220
           KK  E IN++L LVMKSGKY LGYK  LKTLR  K KLVI+A N PPLR
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 122 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 205
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


>08_02_0881 -
           22216657-22216780,22216918-22217056,22217120-22217192,
           22218260-22218357,22218516-22218542,22218625-22218715,
           22218819-22218900,22219983-22220098
          Length = 249

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 502 EPME*SLNSILHFGRKSEIEYYALLAKTGVHHYSGNNI 615
           E M+  L  +LH    S+++YY      G+H+   NN+
Sbjct: 119 EYMDHDLKKVLHHSTPSQVKYYMEQLLKGLHYCHVNNV 156


>01_05_0712 -
           24531654-24531874,24532438-24532538,24532621-24532716,
           24532951-24533048,24533827-24533883,24534764-24534895,
           24535042-24535155,24535227-24535359,24535448-24535678,
           24535761-24535843,24536009-24536137,24536504-24536599,
           24536719-24536773,24537316-24537386,24537472-24537525,
           24537691-24537768,24537985-24538117,24539381-24539496,
           24539580-24539651,24540113-24540218,24540657-24540772,
           24541170-24541319,24541410-24541492,24541591-24541669,
           24542645-24542695
          Length = 884

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 440 IINSIKLHSFLNTVLLDHNVGNLWSSL*TRYF 535
           I++ I +H  L T+  D +V N W +    YF
Sbjct: 790 ILDCIDVHKLLETIFGDQDVANSWKARCAEYF 821


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,203,697
Number of Sequences: 37544
Number of extensions: 365435
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)